genome.fa.s6352.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006352.1 Corchorus capsularis cultivar CVL-1 contig06373, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74104

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1919--1976	29	2.0	30	86	10	84	62	3	3	31	1.29
7647--7673	2	13.5	2	100	0	54	51	0	0	48	1.00
11229--11291	24	2.6	24	82	0	72	34	0	1	63	1.04
11234--11276	20	2.2	20	82	0	50	30	0	0	69	0.88
13471--13524	19	2.6	21	77	19	60	38	3	18	38	1.69
25101--25142	15	2.8	14	86	13	57	21	0	2	76	0.90
25122--25238	62	1.9	62	89	8	186	15	18	2	63	1.42
25122--25238	61	1.9	61	89	8	184	15	18	2	63	1.42
32430--32592	87	1.9	86	85	5	229	32	6	23	37	1.81
37295--37343	16	3.4	16	68	26	54	22	32	8	36	1.84
37295--37366	27	2.6	27	97	2	135	22	30	9	37	1.86
44471--44499	13	2.2	13	100	0	58	48	20	0	31	1.50
46616--46682	33	2.0	33	94	0	116	34	13	19	32	1.91
49017--49089	36	2.0	36	92	5	121	27	21	9	41	1.84
49029--49115	30	2.7	32	84	10	97	31	24	10	34	1.89
49134--49192	19	3.2	19	67	13	59	20	33	10	35	1.86
49108--49266	37	4.3	37	89	3	230	22	30	9	37	1.86
49369--49578	74	2.9	74	92	2	334	25	22	8	43	1.81
49584--49951	37	10.1	37	96	0	654	27	17	8	46	1.78
49584--49951	146	2.5	146	96	0	673	27	17	8	46	1.78
56640--56675	17	2.1	18	89	5	56	27	0	19	52	1.46
56749--56819	37	1.9	37	94	0	124	38	8	16	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59259--59329	37	1.9	37	94	0	124	38	8	16	36	1.80
66085--66172	40	2.2	40	89	4	133	50	13	11	25	1.75
66291--66530	11	21.8	11	75	0	201	47	9	18	24	1.79
66291--66540	55	4.5	55	82	0	275	47	9	18	24	1.79
66293--66532	33	7.3	33	82	0	255	47	9	18	24	1.78
66533--68629	35	60.0	35	79	9	2016	43	10	20	25	1.84
66532--68606	175	11.8	175	86	5	2501	43	10	20	25	1.84
67725--67842	61	2.0	58	83	5	146	42	10	19	27	1.83
68581--68693	32	3.4	32	82	9	145	50	6	15	27	1.68
71813--71848	19	1.9	18	88	5	54	33	22	2	41	1.68

Tables:   1

The End!