Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006354.1 Corchorus capsularis cultivar CVL-1 contig06375, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87822

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2221--2267
22
2.2
21
81
11
51
29
8
14
46
1.74
2879--2939
20
3.0
20
87
4
77
4
1
14
78
0.99
2879--2937
7
8.4
7
79
7
59
5
1
13
79
0.97
6018--6060
18
2.4
18
76
0
50
9
2
13
74
1.16
6862--6908
22
2.2
21
81
11
51
29
8
14
46
1.74
11032--11192
22
8.0
21
64
26
82
25
4
19
50
1.65
11016--11192
59
3.0
59
95
0
318
25
5
18
51
1.66
11508--11565
27
2.1
27
83
0
71
31
32
1
34
1.68
20513--20538
12
2.2
12
100
0
52
15
23
0
61
1.33
22775--22802
2
14.0
2
100
0
56
50
0
0
50
1.00
24732--24834
32
3.2
32
87
0
161
33
37
20
7
1.81
24806--24875
23
3.1
23
84
10
74
34
34
21
10
1.87
24740--24827
16
5.5
16
74
15
83
34
37
19
9
1.83
24835--24876
22
1.9
22
95
0
75
40
28
19
11
1.87
25870--25966
30
3.3
30
68
5
99
11
36
11
41
1.77
25859--26004
58
2.5
58
98
0
283
11
34
13
41
1.80
25900--25994
28
3.3
28
68
5
91
12
32
12
42
1.81
26425--26473
23
2.1
23
82
14
57
10
26
2
61
1.39
28571--28595
2
12.5
2
100
0
50
48
0
0
52
1.00
29786--29814
2
14.5
2
100
0
58
48
0
0
51
1.00
31937--32018
42
2.0
42
92
0
137
41
18
3
36
1.68
32250--32344
9
11.8
9
71
22
68
35
35
20
8
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32243--32345
16
6.5
16
84
2
136
36
35
19
7
1.81
37769--37802
11
3.1
11
91
8
52
0
17
35
47
1.48
37901--37978
34
2.2
34
88
6
111
46
5
0
48
1.24
37928--38001
18
4.2
18
75
18
84
39
2
0
58
1.13
37962--38000
12
3.4
12
86
10
55
35
0
0
64
0.94
40034--40067
9
3.7
9
88
4
50
17
0
0
82
0.67
40033--40067
17
2.1
17
88
0
52
17
0
0
82
0.66
42701--42728
1
28.0
1
100
0
56
100
0
0
0
0.00
46942--46966
9
2.8
9
100
0
50
44
12
36
8
1.71
50181--50272
47
2.0
47
97
0
175
46
16
5
31
1.69
50575--50634
31
1.9
31
93
6
104
43
35
1
20
1.62
51318--51391
32
2.5
28
80
12
76
36
6
21
35
1.80
54878--54902
2
12.5
2
100
0
50
52
0
0
48
1.00
55782--55833
25
2.1
24
85
3
68
61
1
5
30
1.30
56318--56347
3
10.0
3
92
0
51
33
0
3
63
1.11
64294--64346
27
1.9
28
92
3
90
26
13
20
39
1.89
64749--64773
13
1.9
13
100
0
50
32
8
20
40
1.81
64803--64900
32
3.0
32
82
8
110
14
33
35
16
1.89
66027--66057
16
1.9
16
93
0
53
29
29
12
29
1.94
68991--69076
42
2.0
42
91
4
138
5
24
45
24
1.75
72798--72873
38
2.0
38
100
0
134
50
18
10
21
1.76
73115--73215
28
3.7
27
77
13
100
42
23
12
20
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79070--79154
41
2.0
42
88
6
129
5
24
44
24
1.76
79127--79169
12
3.6
12
83
0
50
9
30
37
23
1.86
80177--80294
32
3.7
32
69
20
84
20
32
30
16
1.95
81070--81161
32
2.9
32
75
0
94
26
13
23
36
1.91
81874--81992
33
3.5
33
82
8
134
23
42
26
7
1.81
85239--85283
5
9.2
5
88
9
58
44
0
2
53
1.13
85239--85278
13
2.9
13
92
7
62
45
0
0
55
0.99
85924--85961
11
3.5
11
85
10
51
57
2
0
39
1.12

Tables:   1

The End!