Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006355.1 Corchorus capsularis cultivar CVL-1 contig06376, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44659

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9292--9334
20
2.1
21
87
12
63
11
6
0
81
0.87
11983--12128
71
2.1
71
96
0
265
41
22
6
29
1.78
12591--12633
21
2.0
22
86
4
61
16
0
30
53
1.43
15228--15268
19
2.1
20
86
4
57
70
7
0
21
1.11
24004--24084
42
1.9
42
94
0
144
18
7
30
43
1.78
36554--36583
2
15.0
2
100
0
60
50
0
0
50
1.00
37920--37959
12
3.3
12
92
0
71
35
17
20
27
1.95
37915--37969
24
2.5
21
78
16
67
36
16
23
23
1.94
39232--39288
20
3.0
19
72
22
57
36
15
22
24
1.94
39339--39377
12
3.6
12
74
25
50
30
15
28
25
1.96
39567--39608
20
2.2
19
86
4
57
50
2
2
45
1.27
39622--39672
24
2.2
24
89
6
79
41
5
0
52
1.25
40825--40869
24
2.0
23
86
8
65
53
8
15
22
1.69
41746--41784
6
6.5
6
100
0
78
35
33
0
30
1.58
43844--43873
1
30.0
1
100
0
60
100
0
0
0
0.00

Tables:   1

The End!