Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006361.1 Corchorus capsularis cultivar CVL-1 contig06382, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5989
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.34


Found at i:4663 original size:3 final size:3

Alignment explanation


    Indices: 4655--4681  Score: 54
    Period size: 3  Copynumber: 9.0  Consensus size: 3

       4645 ATAGTATTCA

                                               
       4655 ATT ATT ATT ATT ATT ATT ATT ATT ATT
          1 ATT ATT ATT ATT ATT ATT ATT ATT ATT

       4682 TTTAATCAAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   24  1.00

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (3 bp):   
ATT

Found at i:4800 original size:2 final size:2

Alignment explanation


    Indices: 4782--4822  Score: 57
    Period size: 2  Copynumber: 20.5  Consensus size: 2

       4772 TGGATTTGTT

                      *                                                   
       4782 TA TA TA TG TA -A TGA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA T

       4823 TTGGTAAAGC


Statistics
Matches: 35,  Mismatches: 2, Indels: 4
        0.85            0.05        0.10

Matches are distributed among these distances:
   1    1  0.03
   2   32  0.91
   3    2  0.06

ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49


Consensus pattern (2 bp):   
TA

Done.