Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006362.1 Corchorus capsularis cultivar CVL-1 contig06383, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38067

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3020--3241
116
1.9
113
81
4
266
32
19
20
27
1.97
9359--9580
116
1.9
113
81
4
266
32
18
19
28
1.96
11445--11488
22
2.0
22
86
8
63
40
11
4
43
1.61
11488--11534
22
2.1
22
84
7
60
29
12
10
46
1.76
11561--11607
22
2.1
22
84
7
60
29
12
4
53
1.58
11783--11874
23
4.0
23
82
2
105
38
19
7
34
1.80
11582--12129
22
25.3
21
67
15
212
35
18
9
36
1.84
12169--12219
22
2.4
22
86
3
68
37
13
5
43
1.69
12346--12441
37
2.6
38
77
8
106
55
11
19
13
1.68
12577--12610
18
1.9
18
94
5
61
55
5
17
20
1.62
12713--12777
31
2.1
31
86
8
89
47
4
16
30
1.67
18929--18987
23
2.5
24
70
8
59
40
11
1
45
1.51
24350--24439
45
2.0
45
95
0
162
24
22
20
33
1.97
24933--24973
13
3.2
13
89
3
57
34
4
31
29
1.79
24938--24977
13
3.1
13
92
0
62
32
5
35
27
1.79
32619--32655
2
18.5
2
100
0
74
48
0
0
51
1.00
37160--37209
23
2.3
22
86
10
75
30
12
6
52
1.62

Tables:   1

The End!