Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006367.1 Corchorus capsularis cultivar CVL-1 contig06388, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10774
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27


Found at i:6777 original size:17 final size:17

Alignment explanation


    Indices: 6755--6788  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       6745 CTAATAGAAA

                             
       6755 GTTAAGAGACTCGATGG
          1 GTTAAGAGACTCGATGG

                             
       6772 GTTAAGAGACTCGATGG
          1 GTTAAGAGACTCGATGG

       6789 AAAGCGAAAG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.29, C:0.12, G:0.35, T:0.24


Consensus pattern (17 bp):   
GTTAAGAGACTCGATGG
Done.