genome.fa.s6369.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006369.1 Corchorus capsularis cultivar CVL-1 contig06390, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96884

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1963--2062	51	1.9	52	90	6	159	15	24	34	27	1.94
13431--13468	19	2.0	19	100	0	76	26	5	10	57	1.53
13590--13640	22	2.3	21	78	18	50	37	7	0	54	1.29
14906--15504	22	26.8	21	68	17	157	38	10	16	35	1.82
15336--15526	44	4.4	44	73	7	158	43	9	13	33	1.75
15545--15878	22	15.7	22	67	17	120	40	8	15	35	1.78
15578--15878	66	4.7	64	73	13	224	41	8	15	34	1.77
15610--15859	22	11.7	22	71	10	135	42	8	15	34	1.78
16150--16193	22	2.0	22	86	8	63	38	4	13	43	1.65
17376--17434	3	19.7	3	100	0	118	66	0	0	33	0.92
18275--18308	15	2.2	16	89	5	52	20	0	5	73	1.04
21766--21846	38	2.1	39	88	6	121	38	6	12	43	1.67
21868--21912	5	9.4	5	90	9	76	57	0	20	22	1.40
34237--34302	31	2.1	31	88	5	98	27	22	4	45	1.72
34809--34893	22	3.9	21	75	7	80	37	10	15	36	1.82
34858--34938	22	3.6	22	74	9	56	32	11	20	35	1.88
34985--35039	22	2.5	22	77	8	58	36	10	20	32	1.87
35041--35110	22	3.1	23	73	22	69	38	5	15	40	1.71
35140--35233	21	4.3	23	77	17	76	41	10	13	34	1.79
35133--35387	22	11.6	22	72	12	152	42	10	13	33	1.78
35470--35539	19	3.5	20	84	7	88	48	10	14	27	1.75
35470--35734	22	12.5	22	71	12	119	42	9	14	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35508--35742	66	3.7	63	73	14	196	40	9	14	36	1.79
35796--35872	22	3.5	22	77	7	66	33	12	14	38	1.84
36110--36151	2	22.0	2	88	9	61	45	0	0	54	0.99
37513--37581	29	2.4	29	80	7	86	18	21	17	42	1.90
38166--38200	18	1.9	18	88	0	52	42	11	11	34	1.77
40022--40102	40	2.0	40	85	4	110	54	9	9	25	1.64
40499--40555	19	3.3	19	68	27	63	29	10	5	54	1.56
40488--40555	32	2.1	32	100	0	136	27	8	5	57	1.52
40494--40562	32	2.2	32	94	0	120	28	8	8	53	1.61
40652--40718	31	2.2	31	97	0	125	47	20	17	13	1.81
40741--40803	29	2.2	28	80	8	72	23	22	14	39	1.91
44904--44971	33	2.1	33	91	0	109	44	26	14	14	1.84
50169--50267	31	3.2	30	74	7	90	18	24	21	36	1.95
50476--50537	31	2.0	31	93	0	106	40	8	17	33	1.79
51004--51061	19	3.0	19	72	5	62	18	6	18	55	1.65
52923--52987	30	2.1	31	88	2	96	27	18	4	49	1.67
52929--52994	30	2.1	31	86	5	89	31	15	4	48	1.65
53100--53206	22	4.9	22	94	0	178	34	14	16	34	1.89
53076--53260	22	8.3	22	82	8	119	32	10	18	37	1.86
53100--53260	68	2.4	66	81	6	182	32	11	18	37	1.86
53514--53552	21	2.0	19	85	14	53	46	5	7	41	1.55
53517--53679	87	1.9	87	84	5	222	43	9	12	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53440--53684	43	5.6	44	72	14	179	42	9	13	35	1.77
53785--53851	19	3.5	19	87	2	98	41	11	22	23	1.87
53785--53873	38	2.3	39	80	7	101	40	12	19	28	1.87
53379--53920	22	26.0	20	67	21	164	39	9	16	35	1.80
53842--53941	44	2.4	41	81	11	114	39	10	12	39	1.76
54001--54032	2	16.0	2	100	0	64	50	0	0	50	1.00
54086--54119	2	17.0	2	100	0	68	50	0	0	50	1.00
54100--54233	65	2.0	65	84	8	169	29	12	14	43	1.83
57451--57615	78	2.1	78	94	0	285	47	0	13	38	1.44
57548--57665	57	2.1	54	82	4	146	48	0	12	38	1.47
58850--58891	16	2.7	16	81	3	50	71	7	0	21	1.09
68263--68305	22	2.0	22	95	0	77	25	25	16	32	1.96
69364--69403	2	20.0	2	89	0	62	45	0	5	50	1.23
70566--70637	29	2.4	29	81	2	81	40	26	11	22	1.87
73374--73406	2	16.5	2	93	0	57	51	3	0	45	1.16
73500--73564	23	2.6	24	83	11	78	38	7	0	53	1.30
75252--75285	17	2.1	16	89	10	52	23	11	0	64	1.26
77090--77148	31	1.9	31	85	0	82	44	5	18	32	1.72
77302--77392	30	3.0	31	91	3	157	28	27	17	26	1.98
82616--82666	26	2.0	26	100	0	102	39	3	3	52	1.38
84121--84249	64	2.0	63	89	1	195	28	16	10	44	1.80
87236--87275	20	2.0	20	90	0	62	52	17	12	17	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91252--91285	7	5.0	7	96	3	61	41	0	0	58	0.98
91625--91668	18	2.4	18	96	0	79	25	0	40	34	1.56
93503--93555	13	4.1	13	82	7	63	32	1	1	64	1.15
93501--93555	25	2.1	26	83	16	69	32	1	1	63	1.15
94051--94094	22	2.0	22	86	8	63	40	11	4	43	1.61
94147--94195	22	2.2	23	82	10	66	30	16	4	48	1.64
94380--94459	23	3.5	23	86	1	108	38	15	8	37	1.78
94386--94490	46	2.3	45	83	4	131	33	19	8	39	1.82
94154--94608	22	20.7	22	71	7	165	34	16	9	38	1.81
94721--94860	22	6.4	22	73	3	93	32	13	10	44	1.77
94715--94766	22	2.4	21	81	9	59	32	11	7	48	1.68
94945--95044	22	4.6	21	73	13	85	35	21	6	38	1.78
95098--95213	22	5.2	22	76	10	83	37	19	11	31	1.87
95152--95258	22	4.9	22	77	4	108	33	16	14	35	1.89
95153--95305	66	2.3	66	81	8	161	34	16	13	35	1.87
95469--95506	19	2.0	20	85	15	53	63	2	5	28	1.30
95520--95862	168	2.0	170	83	9	439	43	8	10	37	1.70

Tables:   1

The End!