Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006381.1 Corchorus capsularis cultivar CVL-1 contig06402, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51641

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1110--1184
27
2.8
27
91
2
125
50
4
6
38
1.47
7324--7357
11
3.2
10
84
15
50
76
17
5
0
0.98
10111--10153
20
2.2
20
100
0
86
32
9
4
53
1.53
12567--12595
3
9.7
3
100
0
58
0
0
31
68
0.89
14055--14082
12
2.3
12
100
0
56
50
0
7
42
1.30
19154--19233
21
3.8
21
91
0
88
26
31
28
13
1.94
27458--27496
3
13.0
3
100
0
78
66
0
33
0
0.92
36587--36619
2
16.5
2
100
0
66
51
0
0
48
1.00
38719--38768
21
2.4
21
86
0
73
28
20
12
40
1.87
39382--39414
16
2.1
16
100
0
66
24
24
6
45
1.75
40065--40140
36
2.1
36
92
0
125
35
13
6
44
1.69
45467--45516
26
1.9
26
100
0
100
16
16
38
30
1.90
47162--47188
14
1.9
14
100
0
54
55
0
0
44
0.99
47341--47434
48
2.0
48
97
0
179
39
7
17
36
1.77
47905--47954
24
2.1
24
88
3
75
34
16
2
48
1.57
47917--47963
24
1.9
24
86
4
67
36
19
6
38
1.77
48450--48615
89
1.9
89
90
0
269
32
10
8
48
1.67
48725--48768
20
2.1
21
88
12
65
31
6
11
50
1.65
51253--51641
201
1.9
199
89
2
600
33
19
13
34
1.90

Tables:   1

The End!