Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006385.1 Corchorus capsularis cultivar CVL-1 contig06406, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7235
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31


Found at i:907 original size:33 final size:33

Alignment explanation


    Indices: 858--937  Score: 115
    Period size: 33  Copynumber: 2.4  Consensus size: 33

        848 ATCACTTATG

                *   *              *         
        858 ACCGACCATGCGACTTGGAGATGTCCGACCATC
          1 ACCGGCCACGCGACTTGGAGATGCCCGACCATC

                                *      *     
        891 ACCGGCCACGCGACTTGGAGTTGCCCGGCCATC
          1 ACCGGCCACGCGACTTGGAGATGCCCGACCATC

                          
        924 ACCGGCCACGCGAC
          1 ACCGGCCACGCGAC

        938 AAGGACATGC


Statistics
Matches: 42,  Mismatches: 5, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  33   42  1.00

ACGTcount: A:0.20, C:0.39, G:0.28, T:0.14


Consensus pattern (33 bp):   
ACCGGCCACGCGACTTGGAGATGCCCGACCATC

Found at i:953 original size:33 final size:33

Alignment explanation


    Indices: 886--954  Score: 93
    Period size: 33  Copynumber: 2.1  Consensus size: 33

        876 AGATGTCCGA

                               **   **       
        886 CCATCACCGGCCACGCGACTTGGAGTTGCCCGG
          1 CCATCACCGGCCACGCGACAAGGACATGCCCGG

                                         *   
        919 CCATCACCGGCCACGCGACAAGGACATGCTCGG
          1 CCATCACCGGCCACGCGACAAGGACATGCCCGG

               
        952 CCA
          1 CCA

        955 CAACTGGCCA


Statistics
Matches: 31,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  33   31  1.00

ACGTcount: A:0.20, C:0.41, G:0.28, T:0.12


Consensus pattern (33 bp):   
CCATCACCGGCCACGCGACAAGGACATGCCCGG
Done.