Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006386.1 Corchorus capsularis cultivar CVL-1 contig06407, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1702
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29


Found at i:1258 original size:254 final size:254

Alignment explanation


    Indices: 809--1318  Score: 984
    Period size: 254  Copynumber: 2.0  Consensus size: 254

        799 CCTCACAAGA

                                                                          *  
        809 GCATACAACTCTTTATCATAGGTTGGATAGTTCAATGCAGCCCCATTCAATTTCTCACTAAAGTA
          1 GCATACAACTCTTTATCATAGGTTGGATAGTTCAATGCAGCCCCATTCAATTTCTCACTAAAATA

                                                                             
        874 AGCGACGGGCTTCCCACCTTGCATTAAAACAGCTCCAATTCCAACCCCTGATGCATCACATTCAA
         66 AGCGACGGGCTTCCCACCTTGCATTAAAACAGCTCCAATTCCAACCCCTGATGCATCACATTCAA

                                                  *                          
        939 TCTCAAAAGTAGTGTTAAAGTTAGGTAAAACAAGCAAATGAGCATTGGTTAGTTTATCCTTCAAC
        131 TCTCAAAAGTAGTGTTAAAGTTAGGTAAAACAAGCAAAGGAGCATTGGTTAGTTTATCCTTCAAC

                                                                       
       1004 GCCTCAAATGCTTCTTGTTGTTCATCTCCCCACTTGAATGGTGCATTCTTCTTCATAAC
        196 GCCTCAAATGCTTCTTGTTGTTCATCTCCCCACTTGAATGGTGCATTCTTCTTCATAAC

                          *                                      *           
       1063 GCATACAACTCTTTGTCATAGGTTGGATAGTTCAATGCAGCCCCATTCAATTTTTCACTAAAATA
          1 GCATACAACTCTTTATCATAGGTTGGATAGTTCAATGCAGCCCCATTCAATTTCTCACTAAAATA

                                                                             
       1128 AGCGACGGGCTTCCCACCTTGCATTAAAACAGCTCCAATTCCAACCCCTGATGCATCACATTCAA
         66 AGCGACGGGCTTCCCACCTTGCATTAAAACAGCTCCAATTCCAACCCCTGATGCATCACATTCAA

                                                                             
       1193 TCTCAAAAGTAGTGTTAAAGTTAGGTAAAACAAGCAAAGGAGCATTGGTTAGTTTATCCTTCAAC
        131 TCTCAAAAGTAGTGTTAAAGTTAGGTAAAACAAGCAAAGGAGCATTGGTTAGTTTATCCTTCAAC

                                                                       
       1258 GCCTCAAATGCTTCTTGTTGTTCATCTCCCCACTTGAATGGTGCATTCTTCTTCATAAC
        196 GCCTCAAATGCTTCTTGTTGTTCATCTCCCCACTTGAATGGTGCATTCTTCTTCATAAC

              
       1317 GC
          1 GC

       1319 TTGTAATAGG


Statistics
Matches: 252,  Mismatches: 4, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 254  252  1.00

ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31


Consensus pattern (254 bp):   
GCATACAACTCTTTATCATAGGTTGGATAGTTCAATGCAGCCCCATTCAATTTCTCACTAAAATA
AGCGACGGGCTTCCCACCTTGCATTAAAACAGCTCCAATTCCAACCCCTGATGCATCACATTCAA
TCTCAAAAGTAGTGTTAAAGTTAGGTAAAACAAGCAAAGGAGCATTGGTTAGTTTATCCTTCAAC
GCCTCAAATGCTTCTTGTTGTTCATCTCCCCACTTGAATGGTGCATTCTTCTTCATAAC
Done.