Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006387.1 Corchorus capsularis cultivar CVL-1 contig06408, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48778

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2887--2912
5
5.2
5
100
0
52
19
0
0
80
0.71
2991--3053
26
2.4
26
100
0
126
25
7
11
55
1.62
19886--19987
31
3.3
32
63
16
81
28
23
7
40
1.82
19883--19995
60
1.9
59
94
1
199
27
23
9
39
1.86
22112--22476
182
2.0
179
91
2
588
27
12
12
47
1.78
26288--26338
25
2.0
25
100
0
102
45
11
7
35
1.70
28311--28353
19
2.3
19
80
11
54
32
6
20
39
1.80
43738--43795
23
2.3
25
77
17
66
48
10
0
41
1.37
44354--44384
13
2.4
13
100
0
62
45
0
0
54
0.99
44388--44447
29
2.1
29
93
0
102
30
3
21
45
1.68
44627--44696
29
2.4
29
85
2
86
38
27
8
25
1.85

Tables:   1

The End!