Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006396.1 Corchorus capsularis cultivar CVL-1 contig06417, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19552
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29


Found at i:11719 original size:20 final size:20

Alignment explanation


    Indices: 11694--11731  Score: 76
    Period size: 20  Copynumber: 1.9  Consensus size: 20

      11684 GCTCGTGTGC

                                
      11694 CACGTACCTCCGATCGGTGA
          1 CACGTACCTCCGATCGGTGA

                              
      11714 CACGTACCTCCGATCGGT
          1 CACGTACCTCCGATCGGT

      11732 CCCATACTTG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.18, C:0.37, G:0.24, T:0.21


Consensus pattern (20 bp):   
CACGTACCTCCGATCGGTGA
Done.