Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006400.1 Corchorus capsularis cultivar CVL-1 contig06421, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24453

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1581--1606
3
8.7
3
100
0
52
69
0
0
30
0.89
2438--2467
3
10.0
3
100
0
60
66
0
0
33
0.92
2599--2715
25
4.7
25
95
2
209
35
15
23
24
1.94
2599--2715
12
9.5
12
91
5
189
35
15
23
24
1.94
4598--4656
20
2.9
21
82
12
79
38
18
23
18
1.93
4964--4994
11
2.9
11
95
4
55
74
0
0
25
0.82
5126--5176
15
3.7
15
75
21
58
29
0
13
56
1.38
5130--5223
26
3.6
26
91
0
152
34
0
13
52
1.41
5094--5215
52
2.4
52
82
10
144
33
0
12
53
1.44
5969--6012
13
3.3
13
78
6
52
75
0
18
6
1.02
8287--8341
27
2.0
27
89
0
83
29
20
14
36
1.92
9021--9058
1
38.0
1
100
0
76
0
0
0
100
0.00
16482--16572
38
2.6
35
82
8
105
34
14
16
35
1.89

Tables:   1

The End!