Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006403.1 Corchorus capsularis cultivar CVL-1 contig06424, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12210
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:189 original size:38 final size:39

Alignment explanation


    Indices: 96--189  Score: 109
    Period size: 38  Copynumber: 2.4  Consensus size: 39

         86 ACCCTTACTT

                   *                     *   *     *
         96 ACTGATTGCTACTTTTACTTCTTCTCTTAGTTATCAATTT
          1 ACTGATTACTACTTTTACTTC-TCTCTTAATTACCAATTG

                    * *                            
        136 ACTGATTAATCCTTTTACTTC-CTCTTAATTACCAATTG
          1 ACTGATTACTACTTTTACTTCTCTCTTAATTACCAATTG

                      *     
        174 ACTGATTACTTCTTTT
          1 ACTGATTACTACTTTT

        190 TCTTTTCACT


Statistics
Matches: 46,  Mismatches: 8, Indels: 2
        0.82            0.14        0.04

Matches are distributed among these distances:
  38   28  0.61
  40   18  0.39

ACGTcount: A:0.22, C:0.21, G:0.06, T:0.50


Consensus pattern (39 bp):   
ACTGATTACTACTTTTACTTCTCTCTTAATTACCAATTG
Done.