Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006404.1 Corchorus capsularis cultivar CVL-1 contig06425, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4578

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
446--483
18
2.1
18
100
0
76
44
23
10
21
1.83
668--742
26
2.8
27
83
6
98
45
22
12
20
1.83
2116--2200
28
3.1
27
75
11
75
16
23
0
60
1.36
2310--2373
15
4.3
15
84
9
78
21
15
7
54
1.66
2320--2436
53
2.3
51
82
8
139
16
17
7
58
1.61
2346--2393
23
2.1
22
88
3
69
16
18
6
58
1.59
2404--2555
21
7.0
22
77
8
134
15
19
7
58
1.59
2455--2559
22
4.9
21
79
9
95
17
21
4
56
1.59
2680--2741
16
3.8
16
78
14
63
25
17
8
48
1.75
2713--2753
15
2.7
16
82
17
52
24
17
9
48
1.76
2686--2822
71
1.9
72
86
1
195
27
18
5
47
1.72
2772--2966
55
3.5
55
91
4
304
25
20
7
47
1.75
3712--3926
50
4.3
49
82
8
213
35
15
6
42
1.73
3711--3926
99
2.2
97
81
6
249
35
15
6
42
1.73

Tables:   1

The End!