Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006405.1 Corchorus capsularis cultivar CVL-1 contig06426, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21229

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
547--620
27
2.7
28
85
2
87
37
24
20
17
1.93
2952--3249
119
2.5
120
85
4
372
41
13
7
37
1.72
9358--9407
26
2.0
25
88
7
75
14
18
8
60
1.58
12966--13441
20
24.5
20
66
22
137
49
5
22
21
1.71
12989--13065
35
2.2
34
84
4
100
50
6
24
18
1.70
13009--13044
15
2.5
15
90
4
56
50
5
25
19
1.69
12969--13120
55
2.8
55
82
3
182
48
5
25
20
1.71
13106--13135
15
2.0
15
100
0
60
40
6
33
20
1.78
13052--13189
35
4.0
35
76
7
129
45
7
26
19
1.78
13188--13235
13
3.4
14
85
8
62
54
6
16
22
1.65
13197--13263
27
2.4
28
85
7
84
56
5
11
25
1.57
13247--13415
22
7.7
22
74
8
139
48
5
21
24
1.71
13226--13440
109
2.0
110
80
8
242
50
5
20
23
1.68
13247--13500
22
11.7
22
70
11
114
50
4
21
23
1.67
13253--13422
87
2.0
86
82
5
209
48
5
21
24
1.70
13592--13653
21
2.9
20
77
13
61
61
4
12
20
1.50
13702--13869
26
6.2
26
76
13
144
53
2
21
22
1.59
13702--13869
55
3.1
53
75
10
133
53
2
21
22
1.59
13702--13869
27
6.2
26
76
8
149
53
2
21
22
1.59
17839--18211
35
10.9
34
83
9
431
38
9
19
33
1.84

Tables:   1

The End!