Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006406.1 Corchorus capsularis cultivar CVL-1 contig06427, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38235

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1819--1864
23
2.0
23
95
0
83
39
19
4
36
1.72
2068--2110
22
2.0
22
85
0
59
30
20
9
39
1.84
2081--2318
99
2.3
99
87
7
318
40
9
9
40
1.70
5098--5124
2
13.5
2
100
0
54
0
0
48
51
1.00
7172--7198
2
13.5
2
100
0
54
51
0
0
48
1.00
7679--7794
59
2.0
59
93
3
198
44
22
5
27
1.74
9126--9176
26
2.0
26
96
0
93
54
3
1
39
1.30
9453--9507
27
2.0
27
89
10
85
45
16
14
23
1.84
18131--18168
11
3.5
11
85
10
51
57
2
0
39
1.12
18308--18346
19
2.1
19
95
0
69
35
25
10
28
1.89
24401--24431
13
2.4
13
94
0
53
58
0
19
22
1.40
25621--25876
113
2.2
113
86
3
343
33
16
19
30
1.94
29118--29142
13
1.9
13
100
0
50
52
0
8
40
1.31
29134--29176
16
2.7
16
96
0
77
32
0
25
41
1.56

Tables:   1

The End!