Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006408.1 Corchorus capsularis cultivar CVL-1 contig06429, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66204

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78--145
26
2.6
26
81
9
84
35
2
7
54
1.43
97--145
15
3.5
14
74
25
50
36
4
8
51
1.51
352--384
16
2.0
17
88
5
50
51
0
0
48
1.00
494--532
14
2.8
13
88
7
51
46
0
0
53
1.00
6820--6851
2
16.0
2
100
0
64
0
50
0
50
1.00
11989--12062
37
2.0
37
100
0
148
27
2
29
40
1.70
19415--19470
29
1.9
29
85
0
76
33
17
8
39
1.81
22312--22351
21
1.9
21
85
10
55
22
15
12
50
1.77
27531--27561
16
1.9
16
93
0
53
64
0
0
35
0.94
27817--27856
21
2.0
21
95
5
73
32
22
15
30
1.94
28447--28686
107
2.3
104
89
4
356
40
9
9
40
1.70
28878--28945
30
2.3
29
84
2
82
42
19
4
33
1.71
29628--29683
29
1.9
29
85
7
78
42
0
21
35
1.53
29732--29764
16
2.1
16
94
0
57
78
0
21
0
0.75
31978--32241
109
2.4
109
92
1
431
49
1
10
39
1.46
45692--45731
6
6.7
6
94
0
62
0
2
20
77
0.88
49822--49862
15
2.7
15
88
0
55
56
21
12
9
1.65
49895--49933
20
2.0
20
89
0
60
53
2
5
38
1.37
50083--50170
16
5.5
16
71
10
72
40
35
6
17
1.76
50087--50177
32
2.8
32
88
0
128
39
37
7
15
1.76
50967--51085
63
1.9
63
98
0
229
37
7
19
35
1.80
56009--56063
25
2.2
25
96
0
101
27
0
29
43
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57049--57093
22
2.0
22
86
0
63
24
33
26
15
1.95
57877--57943
21
3.2
21
71
0
71
34
25
11
28
1.91
65645--65683
12
3.6
12
74
25
50
28
25
15
30
1.96
66145--66190
3
15.7
3
95
4
85
32
0
34
32
1.58

Tables:   1

The End!