Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006419.1 Corchorus capsularis cultivar CVL-1 contig06440, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5055
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31


Found at i:2464 original size:15 final size:17

Alignment explanation


    Indices: 2433--2465  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       2423 CATAAGTCTC

                             
       2433 ACATAAGATCAAAATAA
          1 ACATAAGATCAAAATAA

                             
       2450 ACATAAGA-C-AAATAA
          1 ACATAAGATCAAAATAA

             
       2465 A
          1 A

       2466 AGCACAAATA


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    7  0.44
  16    1  0.06
  17    8  0.50

ACGTcount: A:0.67, C:0.12, G:0.06, T:0.15


Consensus pattern (17 bp):   
ACATAAGATCAAAATAA
Done.