Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006421.1 Corchorus capsularis cultivar CVL-1 contig06442, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44568

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2268--2315
20
2.3
21
89
3
71
66
6
8
18
1.39
5683--5751
32
2.2
32
100
0
138
23
14
18
43
1.87
12252--12348
32
2.8
36
81
15
132
27
20
8
43
1.80
12344--12585
41
5.9
40
88
1
331
22
19
11
47
1.81
12344--12585
123
2.0
123
89
3
371
22
19
11
47
1.81
22494--22530
19
2.0
18
89
5
56
40
8
21
29
1.82
23999--24621
41
15.2
41
90
3
880
22
20
9
47
1.79
24616--25053
37
11.9
37
82
7
462
24
17
9
47
1.77
25056--25272
41
5.3
41
85
3
294
24
16
11
47
1.80
25056--25272
83
2.6
82
88
2
337
24
16
11
47
1.80
31224--31256
15
2.1
16
88
5
50
54
15
27
3
1.55
34854--34889
15
2.4
15
90
0
54
11
13
41
33
1.80
34901--34988
16
5.6
16
78
8
99
10
20
34
35
1.86
34899--34988
31
2.8
32
80
6
103
10
21
33
35
1.86
34899--35002
32
3.3
32
79
5
113
10
22
33
33
1.88
35243--35323
42
2.0
41
95
2
144
37
4
18
39
1.72
35935--36069
16
8.4
16
71
3
110
10
20
35
33
1.87
35933--36069
32
4.3
32
79
1
141
10
21
35
33
1.87

Tables:   1

The End!