Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006423.1 Corchorus capsularis cultivar CVL-1 contig06444, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20498

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4791--4820
15
2.0
15
100
0
60
40
26
0
33
1.57
11434--11461
2
14.0
2
100
0
56
50
0
0
50
1.00
14219--14286
16
4.4
15
75
12
57
54
2
0
42
1.15
14233--14293
28
2.2
27
85
5
77
50
3
0
45
1.17
14233--14286
28
1.9
28
88
0
81
53
1
0
44
1.11
14498--14649
35
4.1
35
67
18
112
38
13
0
47
1.47
14396--14606
75
2.8
75
87
4
282
37
10
0
51
1.41
14572--14637
35
1.9
35
96
3
125
42
13
0
43
1.44
15495--15532
11
3.5
11
85
10
51
57
2
0
39
1.12
15755--15785
16
1.9
16
93
0
53
9
19
6
64
1.45
16155--16356
100
2.0
101
95
2
363
39
9
14
35
1.80
17893--17980
45
2.0
45
97
0
167
26
18
20
35
1.95
17800--18086
154
1.8
155
83
6
384
31
16
19
33
1.94
19668--19732
30
2.2
30
94
0
112
21
44
26
7
1.79

Tables:   1

The End!