Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01006424.1 Corchorus capsularis cultivar CVL-1 contig06445, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17558
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.30
Found at i:381 original size:2 final size:2
Alignment explanation
Indices: 370--405 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
360 AATTACTACT
370 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
406 TGCAAATTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1405 original size:33 final size:33
Alignment explanation
Indices: 1359--1432 Score: 130
Period size: 33 Copynumber: 2.2 Consensus size: 33
1349 ACAAAGTTTA
*
1359 TTTAACATACATAATCTCCTCCTTCTACCTTTC
1 TTTATCATACATAATCTCCTCCTTCTACCTTTC
*
1392 TTTATCATGCATAATCTCCTCCTTCTACCTTTC
1 TTTATCATACATAATCTCCTCCTTCTACCTTTC
1425 TTTATCAT
1 TTTATCAT
1433 TAAAAATTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.22, C:0.31, G:0.01, T:0.46
Consensus pattern (33 bp):
TTTATCATACATAATCTCCTCCTTCTACCTTTC
Found at i:1512 original size:36 final size:35
Alignment explanation
Indices: 1465--1630 Score: 234
Period size: 33 Copynumber: 4.8 Consensus size: 35
1455 ACTACCTTGT
1465 ATATTAGTGGCACCTGAAGTTGTCACATGATCAAGA
1 ATATTAGTGGCACCTGAAGTTGTCACAT-ATCAAGA
*
1501 ATATTAGTGGCACCTGAAGTTGTCAC--ATCAAGC
1 ATATTAGTGGCACCTGAAGTTGTCACATATCAAGA
* *
1534 ATATTAGTGACACCTGAAGTTGTCACATGATAAAGA
1 ATATTAGTGGCACCTGAAGTTGTCACAT-ATCAAGA
1570 ATATTAGTGGCACCTGAAGTTGTCAC--ATCAA-A
1 ATATTAGTGGCACCTGAAGTTGTCACATATCAAGA
*
1602 CATATTAGTGACACCTGAAGTTGTCACAT
1 -ATATTAGTGGCACCTGAAGTTGTCACAT
1631 CAAAGAAATA
Statistics
Matches: 117, Mismatches: 7, Indels: 13
0.85 0.05 0.09
Matches are distributed among these distances:
32 1 0.01
33 60 0.51
36 56 0.48
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (35 bp):
ATATTAGTGGCACCTGAAGTTGTCACATATCAAGA
Found at i:1576 original size:69 final size:69
Alignment explanation
Indices: 1465--1630 Score: 305
Period size: 69 Copynumber: 2.4 Consensus size: 69
1455 ACTACCTTGT
* *
1465 ATATTAGTGGCACCTGAAGTTGTCACATGATCAAGAATATTAGTGGCACCTGAAGTTGTCACATC
1 ATATTAGTGACACCTGAAGTTGTCACATGATAAAGAATATTAGTGGCACCTGAAGTTGTCACATC
*
1530 AAGC
66 AAAC
1534 ATATTAGTGACACCTGAAGTTGTCACATGATAAAGAATATTAGTGGCACCTGAAGTTGTCACATC
1 ATATTAGTGACACCTGAAGTTGTCACATGATAAAGAATATTAGTGGCACCTGAAGTTGTCACATC
1599 AAAC
66 AAAC
1603 ATATTAGTGACACCTGAAGTTGTCACAT
1 ATATTAGTGACACCTGAAGTTGTCACAT
1631 CAAAGAAATA
Statistics
Matches: 94, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 94 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (69 bp):
ATATTAGTGACACCTGAAGTTGTCACATGATAAAGAATATTAGTGGCACCTGAAGTTGTCACATC
AAAC
Found at i:6413 original size:40 final size:41
Alignment explanation
Indices: 6286--6429 Score: 157
Period size: 41 Copynumber: 3.5 Consensus size: 41
6276 AAGTAAAGTC
* * *
6286 TTAATCCAGGGCGATTAAGAAGGTCAAACATAATTAAGGTT
1 TTAATCCAGGGCTATTAAGAAAGTCAAACATAGTTAAGGTT
* * * *
6327 TTAATCCAGGGCAAATACGAAAGTCAAACACAGTTAAGGTT
1 TTAATCCAGGGCTATTAAGAAAGTCAAACATAGTTAAGGTT
* * **
6368 TTAATCCAGGGCTATTAAGAAAGTCAGA-TTAGTTAAAATT
1 TTAATCCAGGGCTATTAAGAAAGTCAAACATAGTTAAGGTT
*
6408 TTAATCTAGGG-TGATTAAGAAA
1 TTAATCCAGGGCT-ATTAAGAAA
6430 AGAACAGTTA
Statistics
Matches: 87, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 27 0.31
41 59 0.68
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (41 bp):
TTAATCCAGGGCTATTAAGAAAGTCAAACATAGTTAAGGTT
Found at i:7036 original size:37 final size:36
Alignment explanation
Indices: 6415--7038 Score: 630
Period size: 37 Copynumber: 16.7 Consensus size: 36
6405 ATTTTAATCT
*
6415 AGGGTGATTAAG-AAAAGAACAGTTAAGGAACTTAATTC
1 AGGGTAATTAAGTAAAAG--CAGTTAA-GAACTTAATTC
* * *
6453 ATGGAAATTAAGTAAAAGCAGTCAA-ATGACTTAATTC
1 AGGGTAATTAAGTAAAAGCAGTTAAGA--ACTTAATTC
*
6490 AGGGTAATTAAGTAAGAGCAGTTAAAGAACTTAATTC
1 AGGGTAATTAAGTAAAAGCAGTT-AAGAACTTAATTC
* *
6527 AGGGTAATTAAGTAAGAGCAGTTAAAGAATTTAATTC
1 AGGGTAATTAAGTAAAAGCAGTT-AAGAACTTAATTC
*
6564 AGGGTAATTAAGTAGAAGCAAGTTAAGAACTTAATTC
1 AGGGTAATTAAGTAAAAGC-AGTTAAGAACTTAATTC
*
6601 AGGGCAATTAAGTAAAAGCAGGTTAAGAACTTAATTC
1 AGGGTAATTAAGTAAAAGCA-GTTAAGAACTTAATTC
* *
6638 AGGGCAATTAAGTAAAAGCAGGTAAGAACTTAATTC
1 AGGGTAATTAAGTAAAAGCAGTTAAGAACTTAATTC
* *
6674 AGGGTAGTTAAGTAAAGGAGCAGTTAAGAACTTAATAC
1 AGGGTAATTAAGTAAA--AGCAGTTAAGAACTTAATTC
* * *
6712 AGGGCAATTAAGTAAAAACAGTCAA-AATCTTAATTC
1 AGGGTAATTAAGTAAAAGCAGTTAAGAA-CTTAATTC
** * *
6748 AGGGCGATTAAAAAAAGTAAACATAGTAAGTCAA-AATCTTAATTC
1 A-GG-G--T-AATTAAGT-AA-A-AG-CAGTTAAGAA-CTTAATTC
* * * *
6793 AAGG-AAATAAGTTAAAAGCAGTAAAAGGAGCTTAATTC
1 AGGGTAATTAAG-TAAAAGCAGT-TAA-GAACTTAATTC
* * *
6831 AGGGAAATTAAGTAAACA-CGGTCAAAGAACTTAATTC
1 AGGGTAATTAAGTAAA-AGCAGT-TAAGAACTTAATTC
*
6868 AGGGTAATTAAGTAAAGAACAGTTAAGAACTTAATTC
1 AGGGTAATTAAGTAAA-AGCAGTTAAGAACTTAATTC
**
6905 AGGACAATTAAGTAAAAGCAGTTAAGAACTTAATTC
1 AGGGTAATTAAGTAAAAGCAGTTAAGAACTTAATTC
** *
6941 AGGACAATTAAGTAAAAGCAGTTAAGAACTTAATCC
1 AGGGTAATTAAGTAAAAGCAGTTAAGAACTTAATTC
*
6977 AGGGTAATTAAGTAAAAGCAGTTGAAGGACTTAATTC
1 AGGGTAATTAAGTAAAAGCAGTT-AAGAACTTAATTC
*
7014 AGGGTAATTAAGTAAAAACAGTTAA
1 AGGGTAATTAAGTAAAAGCAGTTAA
7039 AAGGTAAGGA
Statistics
Matches: 507, Mismatches: 52, Indels: 56
0.82 0.08 0.09
Matches are distributed among these distances:
35 3 0.01
36 125 0.25
37 253 0.50
38 73 0.14
39 22 0.04
40 1 0.00
41 6 0.01
42 2 0.00
43 2 0.00
44 2 0.00
45 18 0.04
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.25
Consensus pattern (36 bp):
AGGGTAATTAAGTAAAAGCAGTTAAGAACTTAATTC
Found at i:7097 original size:41 final size:41
Alignment explanation
Indices: 7052--7223 Score: 205
Period size: 41 Copynumber: 4.3 Consensus size: 41
7042 GTAAGGATAG
7052 GCACAGACTTAATTTCAAGGAAGGAAATTAGGTAAAGACAA
1 GCACAGACTTAATTTCAAGGAAGGAAATTAGGTAAAGACAA
* * *
7093 GCACAGACTTAA-TTC-A-G--GGTAATTAAGTAAAG-TAA
1 GCACAGACTTAATTTCAAGGAAGGAAATTAGGTAAAGACAA
* **
7128 GCACATACTTAATTTCATTGAAGGAAATTAGGTAAAGACAA
1 GCACAGACTTAATTTCAAGGAAGGAAATTAGGTAAAGACAA
* *
7169 GCATAGACTTAATTTCAAGGAAGGAAATAAGGTAAA-AGCAA
1 GCACAGACTTAATTTCAAGGAAGGAAATTAGGTAAAGA-CAA
*
7210 GCACATACTTAATT
1 GCACAGACTTAATT
7224 CAGGGTAATT
Statistics
Matches: 109, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
35 13 0.12
36 16 0.15
38 2 0.02
39 1 0.01
40 17 0.16
41 60 0.55
ACGTcount: A:0.45, C:0.12, G:0.19, T:0.24
Consensus pattern (41 bp):
GCACAGACTTAATTTCAAGGAAGGAAATTAGGTAAAGACAA
Found at i:7178 original size:76 final size:81
Alignment explanation
Indices: 7052--7223 Score: 237
Period size: 76 Copynumber: 2.2 Consensus size: 81
7042 GTAAGGATAG
* *
7052 GCACAGACTTAATTTCAAGGAAGGAAATTAGGTAAAGACAAGCACAGACTTAA-TTC-AGG-GTA
1 GCACATACTTAATTTCAAGGAAGGAAATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAGGA
* *
7114 ATTAA-GT-AAAGTAA
66 AATAAGGTAAAAGCAA
** *
7128 GCACATACTTAATTTCATTGAAGGAAATTAGGTAAAGACAAGCATAGACTTAATTTCAAGGAAGG
1 GCACATACTTAATTTCAAGGAAGGAAATTAGGTAAAGACAAGCACAGACTTAATTTCAAGG-AGG
7193 AAATAAGGTAAAAGCAA
65 AAATAAGGTAAAAGCAA
7210 GCACATACTTAATT
1 GCACATACTTAATT
7224 CAGGGTAATT
Statistics
Matches: 83, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
76 49 0.59
77 3 0.04
78 3 0.04
80 6 0.07
81 2 0.02
82 20 0.24
ACGTcount: A:0.45, C:0.12, G:0.19, T:0.24
Consensus pattern (81 bp):
GCACATACTTAATTTCAAGGAAGGAAATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAGGA
AATAAGGTAAAAGCAA
Found at i:7306 original size:36 final size:36
Alignment explanation
Indices: 7230--7328 Score: 105
Period size: 36 Copynumber: 2.8 Consensus size: 36
7220 AATTCAGGGT
* *
7230 AATTAAGT-AAATTAGCAAAGACTTAATTTCATAAG
1 AATTAAGTAAAATCAGCAAAGACTTAATTCCATAAG
*
7265 AATTAAGTAAAATCATCAAAGACTTAA-TCCA-AAG
1 AATTAAGTAAAATCAGCAAAGACTTAATTCCATAAG
* *
7299 ATGATTAAGTAAGATCAGACAAAAACTTAA
1 A--ATTAAGTAAAATCAG-CAAAGACTTAA
7329 CCTCTGGGAT
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
34 4 0.07
35 11 0.20
36 29 0.54
37 10 0.19
ACGTcount: A:0.52, C:0.11, G:0.11, T:0.26
Consensus pattern (36 bp):
AATTAAGTAAAATCAGCAAAGACTTAATTCCATAAG
Found at i:7392 original size:37 final size:36
Alignment explanation
Indices: 7350--7784 Score: 558
Period size: 37 Copynumber: 11.9 Consensus size: 36
7340 AAGTAAAGAA
*
7350 AAGGACTT-AGTTCCAAGGAAGGGAATTAAGTGGAGT
1 AAGGACTTGA-TTCCAAGGAAGGGAATTAAGTAGAGT
* * *
7386 AGAGGACTTCAATCCAAGGAAGGGGATTAAGTAGAGT
1 A-AGGACTTGATTCCAAGGAAGGGAATTAAGTAGAGT
7423 AAAGGACTTGATTCCAAGGAAGGGAATTAAGTAGAGT
1 -AAGGACTTGATTCCAAGGAAGGGAATTAAGTAGAGT
7460 AAAGGACTTGATTCCAAGGAAGGGAATTAAGTAGAGCT
1 -AAGGACTTGATTCCAAGGAAGGGAATTAAGTAGAG-T
* *
7498 AAGGACTTGGTTCCAAGGAAGGGAATTAAGTGGAGT
1 AAGGACTTGATTCCAAGGAAGGGAATTAAGTAGAGT
**
7534 AGAGGACTT-AGTTCCATTGAAGGGAATTAAGTAGAGT
1 A-AGGACTTGA-TTCCAAGGAAGGGAATTAAGTAGAGT
7571 AAAGGACTTGATTCCAAGGAAGGGAATTAAGTAGAGT
1 -AAGGACTTGATTCCAAGGAAGGGAATTAAGTAGAGT
*
7608 AAGGGACTTGATTCCAAGGAAGGGAATTAAGAAGAGT
1 AA-GGACTTGATTCCAAGGAAGGGAATTAAGTAGAGT
7645 AAAGGACTTGATTCCAAGGAAGGGGGAATTAAGTAGAGTT
1 -AAGGACTTGATTCCAAGGAA--GGGAATTAAGTAGAG-T
* * * *
7685 AAGGACTTAATTTCAATGAAGGAAATTAAGT--AG-
1 AAGGACTTGATTCCAAGGAAGGGAATTAAGTAGAGT
7718 -AGGACTTGATTCCAAGGAAGGGAATTAAGTAGAGTT
1 AAGGACTTGATTCCAAGGAAGGGAATTAAGTAGAG-T
* * *
7754 AAGGACTTAATTTCAAGGAAGGAAATTAAGT
1 AAGGACTTGATTCCAAGGAAGGGAATTAAGT
7785 CAAGTTAGGG
Statistics
Matches: 354, Mismatches: 27, Indels: 35
0.85 0.06 0.08
Matches are distributed among these distances:
32 26 0.07
34 2 0.01
35 2 0.01
36 5 0.01
37 280 0.79
38 7 0.02
39 31 0.09
40 1 0.00
ACGTcount: A:0.39, C:0.08, G:0.30, T:0.23
Consensus pattern (36 bp):
AAGGACTTGATTCCAAGGAAGGGAATTAAGTAGAGT
Found at i:7611 original size:18 final size:18
Alignment explanation
Indices: 7553--7613 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
7543 AGTTCCATTG
7553 AAGGGAATTAAGTAGAGT
1 AAGGGAATTAAGTAGAGT
* * * * *
7571 AAAGGACTTGATTCCA-AGG
1 AAGGGAATTAAGT--AGAGT
7590 AAGGGAATTAAGTAGAGT
1 AAGGGAATTAAGTAGAGT
7608 AAGGGA
1 AAGGGA
7614 CTTGATTCCA
Statistics
Matches: 30, Mismatches: 10, Indels: 6
0.65 0.22 0.13
Matches are distributed among these distances:
17 1 0.03
18 17 0.57
19 11 0.37
20 1 0.03
ACGTcount: A:0.43, C:0.05, G:0.33, T:0.20
Consensus pattern (18 bp):
AAGGGAATTAAGTAGAGT
Found at i:7632 original size:19 final size:19
Alignment explanation
Indices: 7574--7632 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 19
7564 GTAGAGTAAA
7574 GGACTTGATTCCAAGGAAG
1 GGACTTGATTCCAAGGAAG
* * * *
7593 GGAATTAAGT--AGAGTAAG
1 GGACTTGATTCCA-AGGAAG
7611 GGACTTGATTCCAAGGAAG
1 GGACTTGATTCCAAGGAAG
7630 GGA
1 GGA
7633 ATTAAGAAGA
Statistics
Matches: 29, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
17 1 0.03
18 12 0.41
19 15 0.52
20 1 0.03
ACGTcount: A:0.36, C:0.10, G:0.34, T:0.20
Consensus pattern (19 bp):
GGACTTGATTCCAAGGAAG
Found at i:7911 original size:36 final size:36
Alignment explanation
Indices: 7796--7947 Score: 243
Period size: 37 Copynumber: 4.2 Consensus size: 36
7786 AAGTTAGGGA
*
7796 CTTAATTCAGGGTAATTAAGTAGCGTCAATAAAGGG
1 CTTAATTCAGGGTAATTAAGTAGCGTCAATAAAAGG
7832 ACTTAATTCAGGGTAATTAAGTAGCGTCAATAAAAAGG
1 -CTTAATTCAGGGTAATTAAGTAGCGTCAAT-AAAAGG
*
7870 CTTAATTCAGGGTAATTAAGTAGTGTCAATAAAAGG
1 CTTAATTCAGGGTAATTAAGTAGCGTCAATAAAAGG
*
7906 CTTAATTCAGGGTAATTAAGTAGAGTCAAT-AAAGAG
1 CTTAATTCAGGGTAATTAAGTAGCGTCAATAAAAG-G
7942 CTTAAT
1 CTTAAT
7948 CTAAAAAGAG
Statistics
Matches: 110, Mismatches: 3, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
35 4 0.04
36 42 0.38
37 59 0.54
38 5 0.05
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.29
Consensus pattern (36 bp):
CTTAATTCAGGGTAATTAAGTAGCGTCAATAAAAGG
Found at i:7973 original size:73 final size:74
Alignment explanation
Indices: 7822--7978 Score: 169
Period size: 73 Copynumber: 2.1 Consensus size: 74
7812 TAAGTAGCGT
* * * **
7822 CAATAAAGGGACTTAATTCAGGGTAATTAAGTAGCGTCAATAAAAAGGCTTAATTCAGGGTAATT
1 CAATAAAAGGACTTAATTCAGGGTAATTAAGTAGAGTCAATAAAAAGGCTTAATTAAAAGTAATT
* ***
7887 AAGTAGTGT
66 AAGCAGAAA
*
7896 CAATAAAAGG-CTTAATTCAGGGTAATTAAGTAGAGTCAATAAAGA-GCTTAATCTAAAAAG-AG
1 CAATAAAAGGACTTAATTCAGGGTAATTAAGTAGAGTCAATAAAAAGGCTTAAT-T-AAAAGTA-
7958 ATTAAGCA-AAA
63 ATTAAGCAGAAA
7969 CAATAAAAGG
1 CAATAAAAGG
7979 GCTTGATTTA
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
72 7 0.10
73 45 0.64
74 18 0.26
ACGTcount: A:0.45, C:0.10, G:0.20, T:0.25
Consensus pattern (74 bp):
CAATAAAAGGACTTAATTCAGGGTAATTAAGTAGAGTCAATAAAAAGGCTTAATTAAAAGTAATT
AAGCAGAAA
Found at i:9338 original size:83 final size:83
Alignment explanation
Indices: 9197--9355 Score: 255
Period size: 83 Copynumber: 1.9 Consensus size: 83
9187 TAAGATTGAA
*
9197 ACATATGCTTTTGTAAACCAAAAGTTTATTGATTGCATTATGTTTATTGTTTGACATGACCAGTT
1 ACATATGCTTTTGTAAACCAAAAGTGTATTGATTGCATTATGTTTATTGTTTGACATGACCAGTT
*
9262 AGGCCATCCCGATAATAC
66 AGACCATCCCGATAATAC
* * * *
9280 ACATATGCTTTTGTAAACCAGAAGTGTATTGATTGCATTATGTTTGTTGTTTGGCATGACCGGTT
1 ACATATGCTTTTGTAAACCAAAAGTGTATTGATTGCATTATGTTTATTGTTTGACATGACCAGTT
*
9345 TGACCATCCCG
66 AGACCATCCCG
9356 GTTCAATTAT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
83 69 1.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (83 bp):
ACATATGCTTTTGTAAACCAAAAGTGTATTGATTGCATTATGTTTATTGTTTGACATGACCAGTT
AGACCATCCCGATAATAC
Found at i:12939 original size:17 final size:18
Alignment explanation
Indices: 12917--12952 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
12907 ATCTCTCCCA
12917 TTCTCCATATTCTT-TTC
1 TTCTCCATATTCTTGTTC
12934 TTCTCCATATTCTTGTTC
1 TTCTCCATATTCTTGTTC
12952 T
1 T
12953 CTCAATTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.11, C:0.28, G:0.03, T:0.58
Consensus pattern (18 bp):
TTCTCCATATTCTTGTTC
Found at i:13147 original size:3 final size:3
Alignment explanation
Indices: 13139--13182 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
13129 TAAATTCGGT
13139 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
13183 GATGATGATG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:13187 original size:3 final size:3
Alignment explanation
Indices: 13181--13213 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
13171 AATAATAATA
13181 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
13214 GAAGCACGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Done.