Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006427.1 Corchorus capsularis cultivar CVL-1 contig06448, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3181
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29


Found at i:772 original size:33 final size:32

Alignment explanation


    Indices: 702--819  Score: 112
    Period size: 33  Copynumber: 3.5  Consensus size: 32

        692 AAAGGATCAT

                          *        *       **
        702 GTGGCCGGTTGTGGACGGGCATGGCCGAGTCAT
          1 GTGGCCGGTTGTGGCCGGGCATGTCC-AGTCGC

                                          *  
        735 GTGGCCGGTTGTGGCCGGGCATGTCCATGTTGC
          1 GTGGCCGGTTGTGGCCGGGCATGTCCA-GTCGC

                          *        *          
        768 GTGGCCGG-TGATGTCCGGGCATCTCCAAGTCGC
          1 GTGGCCGGTTG-TGGCCGGGCATGTCC-AGTCGC

                               
        801 GTGGCCGGTCTTGTGGCCG
          1 GTGGCCGG--TTGTGGCCG

        820 ATGTTTCGTG


Statistics
Matches: 70,  Mismatches: 9, Indels: 10
        0.79            0.10        0.11

Matches are distributed among these distances:
  32    3  0.04
  33   59  0.84
  34    1  0.01
  35    5  0.07
  36    2  0.03

ACGTcount: A:0.08, C:0.25, G:0.42, T:0.24


Consensus pattern (32 bp):   
GTGGCCGGTTGTGGCCGGGCATGTCCAGTCGC
Done.