Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000643.1 Corchorus capsularis cultivar CVL-1 contig00643, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 702

Length: 1170
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38


Found at i:163 original size:19 final size:19

Alignment explanation


    Indices: 125--164  Score: 53
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        115 TTTTCTCCAA

                      *   **   
        125 TTTTCGAAAAGATTTTTTT
          1 TTTTCGAAAAAATTGATTT

                               
        144 TTTTCGAAAAAATTGATTT
          1 TTTTCGAAAAAATTGATTT

              
        163 TT
          1 TT

        165 GAAATTGAAA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.30, C:0.05, G:0.10, T:0.55


Consensus pattern (19 bp):   
TTTTCGAAAAAATTGATTT
Done.