Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006430.1 Corchorus capsularis cultivar CVL-1 contig06451, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1770
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36


Found at i:1670 original size:18 final size:18

Alignment explanation


    Indices: 1647--1684  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1637 TTAACGATGA

                              
       1647 ACTAAACCGGATTAAACT
          1 ACTAAACCGGATTAAACT

                              
       1665 ACTAAACCGGATTAAACT
          1 ACTAAACCGGATTAAACT

              
       1683 AC
          1 AC

       1685 CACAAAGCTA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.45, C:0.24, G:0.11, T:0.21


Consensus pattern (18 bp):   
ACTAAACCGGATTAAACT

Done.