genome.fa.s6433.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006433.1 Corchorus capsularis cultivar CVL-1 contig06454, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79839

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--191	73	2.6	73	93	1	323	50	8	16	23	1.73
3633--3663	13	2.5	13	94	5	55	32	0	0	67	0.91
3633--3663	6	5.0	6	92	7	53	32	0	0	67	0.91
11143--11264	26	4.7	26	78	8	131	15	14	40	29	1.87
11143--11264	53	2.3	52	88	4	174	15	14	40	29	1.87
23058--23231	59	2.9	59	95	0	312	35	23	16	24	1.95
26453--26611	60	2.7	59	85	3	194	30	16	13	38	1.88
28359--28742	156	2.5	155	75	6	380	33	19	15	30	1.93
31990--32021	12	2.7	12	95	0	55	31	6	9	53	1.58
33220--33357	48	2.9	47	85	2	186	31	15	28	23	1.95
33388--33446	15	3.7	15	87	12	91	45	0	22	32	1.52
33357--33446	23	3.9	22	75	17	83	42	2	22	33	1.66
33476--33608	38	3.5	38	87	0	185	30	18	19	30	1.96
33585--33630	22	2.0	24	87	8	69	36	8	17	36	1.81
33510--33962	98	4.6	98	93	1	746	32	15	18	33	1.92
33617--33706	38	2.4	38	90	0	135	35	14	15	34	1.88
33655--34022	60	5.9	60	74	15	293	30	16	18	34	1.93
33708--33804	38	2.6	37	91	3	151	30	15	18	35	1.92
33782--33826	22	2.0	24	86	8	67	37	11	17	33	1.85
33655--34022	158	2.3	157	83	4	438	30	16	18	34	1.93
33806--33902	38	2.6	37	90	3	151	30	14	19	35	1.92
33880--33924	22	2.0	24	86	8	67	37	11	17	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33940--33984	22	2.0	24	91	8	76	35	13	20	31	1.91
35463--35488	12	2.2	12	100	0	52	23	0	15	61	1.33
35781--35828	14	3.5	13	83	8	60	35	12	8	43	1.73
37566--37601	19	1.9	18	88	5	54	41	2	22	33	1.68
38855--38888	16	2.2	16	89	5	52	29	2	8	58	1.43
43315--43346	13	2.5	13	95	5	57	40	6	15	37	1.73
44561--44619	26	2.2	28	78	12	77	33	16	6	42	1.75
44569--44621	26	2.0	26	92	0	88	37	15	7	39	1.75
45122--45271	56	2.7	57	87	3	205	24	16	5	53	1.64
45315--45488	32	5.5	31	88	4	233	16	22	5	55	1.62
45388--45475	16	5.4	17	77	10	103	15	20	6	56	1.62
45315--45488	96	1.8	96	87	5	262	16	22	5	55	1.62
45401--45574	36	5.1	35	86	2	180	16	19	5	58	1.57
45315--45574	64	3.9	67	81	9	214	16	21	5	56	1.60
46062--46145	40	2.1	40	82	4	98	27	25	3	44	1.70
49482--49556	30	2.5	30	84	4	98	26	30	30	12	1.92
52000--52104	33	3.2	33	82	5	140	22	8	21	46	1.78
52048--52140	33	2.8	32	84	7	107	25	8	22	43	1.82
52000--52137	66	2.1	66	82	5	163	25	8	21	44	1.81
52097--52226	66	2.0	66	81	3	154	29	10	18	41	1.84
52130--52226	33	2.9	33	96	0	176	27	11	17	43	1.83
55842--55871	15	1.9	16	93	6	53	6	16	10	66	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59804--59837	11	3.1	11	86	0	50	32	0	14	52	1.42
65513--65539	13	2.1	13	100	0	54	22	14	11	51	1.73
66706--66739	11	3.2	10	84	15	50	29	2	17	50	1.61
70765--70993	127	1.8	127	89	3	363	28	19	20	31	1.97
71096--71179	35	2.4	35	83	0	105	35	21	15	27	1.94
74395--74447	26	2.0	26	92	0	88	35	16	9	37	1.82
74957--75102	56	2.6	55	84	5	175	23	17	4	53	1.63
75152--75330	32	5.5	32	80	7	189	16	22	5	55	1.60
75241--75449	36	5.8	36	73	13	137	17	18	4	59	1.54
75393--75466	14	5.7	14	75	15	61	14	22	2	59	1.48
75393--75514	50	2.4	50	89	4	174	16	22	3	58	1.53
75555--75697	34	4.3	34	75	5	105	22	21	3	52	1.62
76075--76150	32	2.4	32	97	0	143	25	21	5	48	1.70

Tables:   1

The End!