Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006437.1 Corchorus capsularis cultivar CVL-1 contig06458, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60550

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6646--6946
102
2.9
102
86
6
369
43
8
9
38
1.67
10490--10524
18
1.9
18
88
0
52
45
5
22
25
1.74
14206--14242
15
2.4
16
82
13
51
56
0
5
37
1.22
20120--20323
11
18.1
12
64
23
61
47
0
0
50
1.11
20206--20286
9
8.8
9
74
16
60
44
0
0
55
0.99
23441--23712
137
2.0
139
92
2
458
40
14
14
31
1.86
24140--24264
22
5.7
22
78
5
101
40
18
9
32
1.83
24140--24284
44
3.3
44
77
3
157
39
16
11
33
1.84
24161--24284
22
5.6
22
76
11
110
38
16
11
33
1.85
24170--24357
66
2.8
66
76
7
175
40
18
9
31
1.81
26266--26750
257
1.9
254
91
2
801
45
7
8
39
1.62
27103--27139
18
2.1
18
100
0
74
32
0
21
45
1.52
33152--33223
29
2.4
30
86
2
92
18
22
16
43
1.88
33265--33362
45
2.2
45
96
0
178
19
24
26
29
1.98
33328--33408
32
2.5
32
87
0
108
22
23
23
30
1.99
33482--33544
28
2.1
28
82
8
72
52
17
12
17
1.75
35757--35815
30
2.0
30
89
0
91
27
20
18
33
1.96
39476--39504
15
2.0
15
93
6
51
0
20
3
75
0.94
42450--42478
14
2.0
15
93
6
51
58
13
27
0
1.36
45948--45990
22
2.0
22
86
8
63
44
13
0
41
1.44
48673--49003
162
2.0
161
94
2
574
25
18
26
29
1.98
52217--52258
16
2.5
17
80
3
50
38
0
23
38
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53980--54020
21
2.0
20
85
4
55
46
39
0
14
1.45
54885--55094
61
3.2
61
63
22
145
36
9
12
40
1.76
56176--56200
13
1.9
13
100
0
50
40
20
8
32
1.81

Tables:   1

The End!