Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006439.1 Corchorus capsularis cultivar CVL-1 contig06460, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6617
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31


Found at i:6480 original size:25 final size:25

Alignment explanation


    Indices: 6446--6495  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       6436 AGTCGCATAT

                                     
       6446 ATTGGTCTAAAGCTATAACAAAGAC
          1 ATTGGTCTAAAGCTATAACAAAGAC

                                     
       6471 ATTGGTCTAAAGCTATAACAAAGAC
          1 ATTGGTCTAAAGCTATAACAAAGAC

       6496 TTTTCCTTTA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24


Consensus pattern (25 bp):   
ATTGGTCTAAAGCTATAACAAAGAC
Done.