Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006440.1 Corchorus capsularis cultivar CVL-1 contig06461, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48130

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--85
2
43.5
2
79
13
70
47
3
0
49
1.18
7669--7697
3
9.7
3
100
0
58
68
0
0
31
0.89
9002--9201
104
1.9
104
91
0
328
29
17
14
39
1.89
11569--11734
22
7.6
22
74
11
99
39
9
15
35
1.79
11569--11645
23
3.5
22
75
13
68
45
7
15
31
1.75
11612--11734
43
2.8
43
78
7
106
37
8
14
39
1.78
13417--13620
37
5.5
37
71
12
175
16
40
18
25
1.91
13412--13620
75
2.8
75
86
3
287
16
39
17
25
1.91
14880--14947
30
2.3
30
87
7
95
16
10
30
42
1.81
15979--16404
149
2.9
148
93
2
723
35
24
15
23
1.94
15979--16404
75
5.8
74
94
1
723
35
24
15
23
1.94
16928--16972
2
22.5
2
81
0
54
46
4
4
44
1.43
29407--29453
21
2.3
20
79
13
53
44
4
0
51
1.21
29980--30029
17
2.9
17
78
3
55
36
0
4
60
1.16
30070--30208
69
2.0
72
94
5
248
43
27
4
25
1.73
32313--32364
10
4.9
10
86
9
59
0
15
0
84
0.62
32314--32351
6
6.5
6
93
6
69
0
13
0
86
0.56
32314--32362
17
2.8
17
87
9
55
0
14
0
85
0.59
32318--32364
11
4.3
11
89
8
69
0
12
0
87
0.55
32871--33281
35
11.6
35
77
12
403
35
24
16
23
1.95
32894--33281
74
5.5
72
87
9
550
36
23
16
23
1.94
33051--33098
25
1.9
25
95
0
87
33
29
20
16
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33016--33137
60
2.0
60
98
0
235
36
24
18
19
1.94
32942--33211
134
2.0
134
97
0
504
36
24
16
22
1.94
33076--33281
75
2.8
74
96
0
385
35
25
16
23
1.94
33259--33311
27
2.0
27
84
0
70
28
30
26
15
1.96
34270--34294
12
2.1
12
100
0
50
8
0
24
68
1.16
38837--38900
26
2.5
26
94
0
110
6
25
40
28
1.79
41512--41621
33
3.3
33
79
5
114
25
9
21
43
1.82

Tables:   1

The End!