Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006442.1 Corchorus capsularis cultivar CVL-1 contig06463, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19213

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--46
2
21.0
2
85
0
57
42
4
2
50
1.36
291--419
55
2.3
55
98
0
249
40
13
5
40
1.68
6545--6581
14
2.8
14
88
12
60
24
0
29
45
1.53
6546--6600
27
2.1
27
86
10
78
30
0
25
43
1.55
6545--6581
12
2.8
13
92
8
58
24
0
29
45
1.53
8507--8667
87
1.8
88
85
4
227
44
4
17
33
1.68
10461--10537
37
2.1
37
95
0
136
23
16
18
41
1.90
13586--13654
36
1.9
35
88
2
102
26
8
24
40
1.84
14218--14260
21
2.0
21
100
0
86
44
4
9
41
1.57
14908--14949
12
3.6
12
83
6
59
9
21
7
61
1.50
14910--14963
22
2.4
23
84
9
67
5
22
7
64
1.40
15357--15414
19
2.9
20
84
7
82
43
24
10
22
1.84
15357--15414
21
2.9
21
85
12
77
43
24
10
22
1.84
15906--16062
64
2.5
63
78
1
179
36
15
22
25
1.94
16046--16452
49
8.4
49
91
3
628
31
17
28
21
1.96
16046--16452
145
2.8
146
89
4
633
31
17
28
21
1.96

Tables:   1

The End!