Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006444.1 Corchorus capsularis cultivar CVL-1 contig06465, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16356

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1240--1269
2
15.0
2
100
0
60
50
0
0
50
1.00
4455--4509
22
2.4
23
81
3
67
38
18
12
30
1.88
4578--4684
23
4.7
23
83
4
112
36
14
9
40
1.78
4559--4848
22
13.6
21
74
8
110
33
16
8
42
1.78
4954--5059
22
4.8
22
73
9
90
33
16
9
41
1.80
4929--5079
44
3.4
44
75
1
142
32
15
9
43
1.78
5091--5144
22
2.4
21
82
14
63
33
12
12
40
1.82
5184--5323
22
6.4
21
70
14
70
37
17
7
37
1.78
5371--5475
46
2.3
44
83
6
122
40
17
11
30
1.84
5359--5523
22
7.4
22
76
10
120
41
18
8
31
1.81
5688--5725
19
2.0
20
85
15
53
63
2
5
28
1.30
5908--5962
30
1.9
30
85
10
80
50
1
3
43
1.30
7037--7097
31
2.0
31
84
6
81
45
4
16
32
1.68
7838--8062
49
4.6
49
79
8
246
34
16
28
21
1.94
10869--10898
2
15.0
2
100
0
60
50
0
0
50
1.00
11354--11402
22
2.2
22
85
0
62
28
14
2
55
1.51
11388--11667
22
12.6
23
72
14
110
37
16
11
35
1.84
11565--11666
23
4.5
23
85
1
109
39
14
8
37
1.78
11693--11811
22
5.4
22
72
9
91
33
15
10
41
1.80
12100--12164
31
2.1
31
97
0
121
41
21
15
21
1.90
12619--12858
122
2.0
118
87
3
345
45
7
10
36
1.68
13894--13961
31
2.2
32
81
10
86
45
4
14
35
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13901--13966
31
2.1
31
88
5
98
46
3
18
31
1.64

Tables:   1

The End!