Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006445.1 Corchorus capsularis cultivar CVL-1 contig06466, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2147
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:318 original size:13 final size:13

Alignment explanation


    Indices: 300--326  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

        290 GGTGACATCG

                         
        300 GCATGGCATGGGT
          1 GCATGGCATGGGT

                         
        313 GCATGGCATGGGT
          1 GCATGGCATGGGT

             
        326 G
          1 G

        327 TTGTCCGCGC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.15, C:0.15, G:0.48, T:0.22


Consensus pattern (13 bp):   
GCATGGCATGGGT

Found at i:472 original size:21 final size:21

Alignment explanation


    Indices: 434--473  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        424 CAGGCCCTTG

                       ***       
        434 CAGCTGGGTGCTGGGGCTTTC
          1 CAGCTGGGTGCCCAGGCTTTC

                               
        455 CAGCTGGGTGCCCAGGCTT
          1 CAGCTGGGTGCCCAGGCTT

        474 ACGACATGGG


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   16  1.00

ACGTcount: A:0.07, C:0.28, G:0.40, T:0.25


Consensus pattern (21 bp):   
CAGCTGGGTGCCCAGGCTTTC
Done.