genome.fa.s6447.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006447.1 Corchorus capsularis cultivar CVL-1 contig06468, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78205

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9458--9485	2	14.0	2	100	0	56	50	0	0	50	1.00
11010--11037	11	2.5	11	100	0	56	21	25	25	28	1.99
11098--11134	12	3.1	12	92	0	65	32	18	24	24	1.97
11151--11210	27	2.3	27	91	2	95	46	11	3	38	1.57
11164--11218	27	2.0	27	89	0	83	52	9	5	32	1.56
15650--15684	11	3.0	12	83	8	54	28	34	20	17	1.95
21207--21280	33	2.2	33	95	0	130	35	9	17	37	1.82
21218--21291	33	2.2	33	92	0	121	27	9	21	41	1.84
24933--25014	38	2.2	38	90	0	128	48	14	13	23	1.79
25010--25101	42	2.2	41	88	7	141	46	8	18	26	1.78
25097--25360	37	7.1	37	85	3	343	46	6	18	28	1.75
25372--25772	41	9.8	41	90	3	612	43	9	23	22	1.83
25756--25925	32	5.0	35	79	14	185	43	5	22	28	1.76
25756--25925	68	2.5	69	87	4	249	43	5	22	28	1.76
26082--26251	87	2.0	87	100	0	340	47	11	17	23	1.81
30605--30721	38	3.1	38	84	7	132	27	18	18	35	1.95
33120--33206	38	2.3	38	89	0	138	47	13	13	25	1.80
33202--33293	42	2.2	41	88	3	139	44	9	21	23	1.82
33289--33589	37	8.1	37	85	4	383	44	9	19	26	1.81
33593--33960	41	9.0	41	95	0	628	45	9	22	22	1.82
33962--34091	32	3.9	32	80	11	145	43	4	20	30	1.72
33948--34115	68	2.4	68	89	2	246	42	5	20	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36118--36171	27	2.0	27	88	0	81	11	33	40	14	1.82
40215--40279	33	1.9	34	84	6	87	26	18	20	35	1.95
42784--42818	1	35.0	1	100	0	70	0	0	0	100	0.00
45646--45683	11	3.5	11	89	10	51	39	0	2	57	1.12
52975--53008	11	3.2	10	84	15	50	29	2	17	50	1.61
70025--70058	11	3.2	10	84	15	50	29	2	17	50	1.61

Tables:   1

The End!