Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006448.1 Corchorus capsularis cultivar CVL-1 contig06469, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7007
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:111 original size:21 final size:21

Alignment explanation


    Indices: 78--121  Score: 54
    Period size: 21  Copynumber: 2.1  Consensus size: 21

         68 AGCTGCTGCC

                 *                
         78 GAGACCTTGCCTAAAG-AAGAT
          1 GAGACATTGCCT-AAGCAAGAT

                    *            
         99 GAGACATTTCCTAAGCAAGAT
          1 GAGACATTGCCTAAGCAAGAT

              
        120 GA
          1 GA

        122 AGCTATAGTT


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  20    3  0.15
  21   17  0.85

ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20


Consensus pattern (21 bp):   
GAGACATTGCCTAAGCAAGAT
Done.