Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006453.1 Corchorus capsularis cultivar CVL-1 contig06474, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11606
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32


Found at i:3495 original size:22 final size:22

Alignment explanation


    Indices: 3467--3517  Score: 77
    Period size: 22  Copynumber: 2.3  Consensus size: 22

       3457 CTGCCATAAT

                                 * 
       3467 GTCATCA-CTAGAACCTTACAGA
          1 GTCATCATC-AGAACCTTACAAA

                                  
       3489 GTCATCATCAGAACCTTACAAA
          1 GTCATCATCAGAACCTTACAAA

                   
       3511 GTCATCA
          1 GTCATCA

       3518 GATGCATGTG


Statistics
Matches: 27,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  22   26  0.96
  23    1  0.04

ACGTcount: A:0.37, C:0.27, G:0.12, T:0.24


Consensus pattern (22 bp):   
GTCATCATCAGAACCTTACAAA

Found at i:8048 original size:12 final size:12

Alignment explanation


    Indices: 8030--8061  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

       8020 GCCGCGCAAC

                        
       8030 ACCGGCCACATG
          1 ACCGGCCACATG

            *           
       8042 TCCGGCCACATG
          1 ACCGGCCACATG

                    
       8054 ACCGGCCA
          1 ACCGGCCA

       8062 TCGCATGCGA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.22, C:0.44, G:0.25, T:0.09


Consensus pattern (12 bp):   
ACCGGCCACATG
Done.