Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006455.1 Corchorus capsularis cultivar CVL-1 contig06476, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50311

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1505--1611
16
6.7
15
77
10
97
8
24
37
29
1.85
1493--1596
48
2.2
48
82
6
122
10
21
36
31
1.87
1525--1611
32
2.7
31
92
1
138
6
25
37
29
1.82
1713--2525
215
3.8
217
84
6
1028
36
6
20
36
1.78
2263--2313
23
2.3
23
83
6
61
27
1
35
35
1.68
10793--10949
78
2.0
78
88
2
235
22
28
19
29
1.98
11530--11568
15
2.5
16
87
8
62
51
35
12
0
1.40
11724--11807
32
2.6
32
92
0
141
39
33
9
17
1.82
16340--16382
10
4.4
10
83
16
63
27
0
9
62
1.25
17240--17312
33
2.2
32
83
11
87
12
35
36
15
1.84
17675--17727
3
18.0
3
96
3
99
33
0
0
66
0.92
17807--17922
24
4.7
27
68
17
74
45
7
5
41
1.55
18835--18933
45
2.3
42
82
8
110
40
8
16
35
1.78
18910--18956
23
2.1
23
84
11
62
38
6
19
36
1.77
18835--19251
22
19.0
22
65
16
118
36
8
17
37
1.80
18814--19182
22
16.8
21
66
14
129
38
8
16
36
1.79
18996--19090
43
2.2
42
87
5
129
38
12
14
33
1.84
19011--19111
20
4.9
20
80
12
107
38
11
15
33
1.85
19363--19448
23
3.8
22
80
4
82
37
10
11
40
1.76
19590--19642
22
2.4
22
78
6
63
50
5
13
30
1.64
19645--19688
22
2.0
23
86
8
65
40
4
13
40
1.65
19709--19768
22
2.7
22
92
0
93
38
11
10
40
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20203--20253
17
3.1
16
86
8
66
35
21
21
21
1.96
24930--24960
2
15.5
2
100
0
62
48
0
0
51
1.00
31560--31585
7
3.7
7
100
0
52
30
15
30
23
1.95
35565--35684
60
2.0
60
98
0
231
23
19
13
44
1.85
36256--36281
7
3.7
7
100
0
52
30
15
30
23
1.95
39404--39460
24
2.2
24
84
9
69
50
7
1
40
1.40
39328--39449
2
60.0
2
77
18
92
51
6
1
40
1.38
40419--40453
14
2.5
14
90
0
52
17
17
14
51
1.77
44945--45007
33
1.9
33
90
0
99
9
23
44
22
1.82
44949--45022
33
2.2
33
83
4
87
8
24
47
20
1.77
49943--49978
19
1.9
18
88
5
54
33
22
2
41
1.68

Tables:   1

The End!