genome.fa.s6457.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006457.1 Corchorus capsularis cultivar CVL-1 contig06478, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76420

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1462--1502	20	2.0	20	90	9	66	43	31	9	14	1.78
3969--4002	16	2.1	17	88	5	52	41	23	8	26	1.83
5767--5791	10	2.5	10	100	0	50	24	8	20	48	1.76
11544--11621	35	2.2	35	88	0	120	51	8	10	29	1.66
14738--14800	2	32.5	2	76	6	58	6	50	0	42	1.27
20215--20255	19	2.2	19	90	0	64	24	19	7	48	1.74
25527--25551	10	2.5	10	100	0	50	92	0	0	8	0.40
40633--40658	10	2.6	10	100	0	52	50	19	7	23	1.73
41596--41622	6	4.5	6	100	0	54	29	0	14	55	1.40
47129--47179	20	2.4	21	80	6	68	19	5	7	66	1.38
47762--47787	10	2.6	10	100	0	52	50	19	7	23	1.73
48727--48753	6	4.5	6	100	0	54	29	0	14	55	1.40
52684--52770	35	2.5	35	82	0	111	32	11	18	37	1.86
52770--53238	22	21.5	21	69	13	209	56	5	20	17	1.59
52965--53030	7	9.0	7	75	9	51	63	0	19	16	1.31
52971--53072	29	3.4	29	73	8	98	60	2	20	15	1.47
53045--53189	21	6.8	22	82	8	167	51	6	22	19	1.69
53200--53265	20	3.2	20	72	14	53	57	3	22	16	1.53
53214--53384	26	7.0	26	65	27	99	59	2	22	15	1.48
53214--53276	27	2.3	27	73	10	65	60	1	23	14	1.43
53247--53422	7	25.3	7	71	14	114	56	2	23	17	1.54
53249--53350	19	5.8	19	73	18	96	58	1	24	14	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53216--53368	52	3.1	49	84	12	188	58	1	23	15	1.47
53341--53427	36	2.4	37	86	1	113	54	4	21	19	1.62
53436--53491	26	2.2	26	93	3	96	51	3	16	28	1.60
53493--53532	21	1.9	21	84	0	53	57	2	27	12	1.48
53481--53532	14	3.7	14	76	0	50	55	3	25	15	1.57
53502--53594	36	2.5	37	81	6	109	55	5	23	15	1.60
53619--53689	21	3.1	21	72	18	52	53	4	16	25	1.61
53655--53714	32	1.9	32	93	3	104	58	3	18	20	1.53
53687--53751	26	2.6	27	80	11	75	64	3	16	15	1.41
53765--53868	26	3.8	27	71	17	72	58	0	23	17	1.44
53778--53852	26	2.9	26	78	9	73	58	1	21	18	1.46
53785--53852	25	2.6	26	77	11	68	58	1	20	19	1.47
57037--57108	25	2.7	26	81	12	83	41	5	2	50	1.40
58100--58223	43	2.9	43	87	2	169	41	15	29	14	1.86
58275--58620	151	2.3	150	79	8	389	38	16	24	20	1.93
60344--61146	99	8.1	99	88	3	1121	28	22	22	26	1.99
60344--61146	200	4.0	200	90	1	1179	28	22	22	26	1.99
61204--61350	34	4.4	34	89	3	226	19	25	16	38	1.92
61204--61350	66	2.2	67	91	4	235	19	25	16	38	1.92
65396--65436	21	1.9	21	85	5	55	24	36	21	17	1.94
67585--67614	11	2.7	11	94	0	51	40	0	20	40	1.52
68166--68277	32	3.5	32	90	6	156	27	21	6	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68328--69044	151	4.9	147	82	7	755	24	21	9	43	1.82
68305--69052	115	6.8	109	83	6	743	24	21	9	44	1.82
68328--69054	35	19.8	35	81	8	684	24	21	9	44	1.82
69058--69161	40	2.6	40	86	3	129	26	16	11	45	1.81

Tables:   1

The End!