Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000646.1 Corchorus capsularis cultivar CVL-1 contig00646, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 833

Length: 1389
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27


Found at i:918 original size:18 final size:18

Alignment explanation


    Indices: 897--940  Score: 88
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        887 ACGCCGGGAT

                              
        897 GAAGAGGCAAAACTCCGA
          1 GAAGAGGCAAAACTCCGA

                              
        915 GAAGAGGCAAAACTCCGA
          1 GAAGAGGCAAAACTCCGA

                    
        933 GAAGAGGC
          1 GAAGAGGC

        941 CATGAATGCT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   26  1.00

ACGTcount: A:0.43, C:0.20, G:0.32, T:0.05


Consensus pattern (18 bp):   
GAAGAGGCAAAACTCCGA
Done.