Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006468.1 Corchorus capsularis cultivar CVL-1 contig06489, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7015
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33


Found at i:2317 original size:19 final size:18

Alignment explanation


    Indices: 2293--2329  Score: 56
    Period size: 19  Copynumber: 2.0  Consensus size: 18

       2283 TTGAAGATCT

                               
       2293 CTTGAAGATAATTTGAAGA
          1 CTTGAAGATAA-TTGAAGA

                     *        
       2312 CTTGAAGATCATTGAAGA
          1 CTTGAAGATAATTGAAGA

       2330 ATTATTTCAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    7  0.41
  19   10  0.59

ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30


Consensus pattern (18 bp):   
CTTGAAGATAATTGAAGA
Done.