genome.fa.s6477.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006477.1 Corchorus capsularis cultivar CVL-1 contig06498, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26402

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1415--1570	78	2.0	78	86	2	215	30	19	26	23	1.98
3083--3144	31	2.0	32	83	3	81	53	4	14	27	1.61
3192--3270	37	2.1	38	90	4	124	35	8	18	36	1.83
4314--4343	15	2.0	15	93	0	51	20	30	23	26	1.98
5789--5863	39	1.9	39	86	5	107	42	12	16	29	1.83
14107--14139	2	16.5	2	100	0	66	48	0	0	51	1.00
15143--15190	20	2.3	21	89	3	71	66	6	8	18	1.39
16518--16556	19	2.1	18	85	4	51	33	20	5	41	1.74
20132--20311	26	6.6	26	75	12	146	20	22	4	52	1.64
20138--20258	28	4.4	28	71	15	101	19	20	5	53	1.65
20128--20258	55	2.4	54	78	10	144	21	21	5	51	1.67
20230--20284	16	3.4	16	73	21	53	20	20	0	60	1.37
20313--20377	28	2.4	26	71	19	60	20	24	1	53	1.54
20339--20430	38	2.4	37	81	13	98	14	23	2	59	1.46
20378--20450	27	2.7	28	87	8	107	15	24	2	57	1.51
20262--20488	66	3.5	64	80	10	201	18	24	2	55	1.54
20405--20488	39	2.2	36	83	8	105	14	25	2	58	1.48
20510--20753	22	10.9	22	71	20	96	22	18	4	54	1.63
20592--20908	43	7.5	43	72	15	214	24	20	4	51	1.66
20592--20903	104	2.9	105	81	9	327	24	20	4	50	1.66
20592--20908	22	15.0	21	74	15	217	24	20	4	51	1.66
20947--21013	34	2.1	33	86	10	95	22	19	10	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20955--21034	36	2.4	34	83	8	92	20	21	7	51	1.71
24536--24574	14	2.7	14	84	4	51	51	12	10	25	1.71
24897--24970	27	2.7	28	83	12	91	45	28	12	13	1.79

Tables:   1

The End!