Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006478.1 Corchorus capsularis cultivar CVL-1 contig06499, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54781

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5308--5410
45
2.3
46
89
3
165
36
19
7
35
1.81
5419--5443
11
2.3
11
100
0
50
0
24
0
76
0.80
5881--6020
75
1.9
75
87
0
208
30
21
11
37
1.89
6155--6202
3
16.0
3
100
0
96
33
0
0
66
0.92
10442--10540
26
3.8
25
76
19
87
20
24
2
53
1.56
10902--11068
72
2.4
68
83
6
199
26
19
6
47
1.73
11044--11494
55
8.2
55
95
1
796
25
19
6
47
1.75
13065--13108
23
1.9
23
95
0
79
22
31
11
34
1.90
15058--15132
27
2.8
27
83
0
96
46
25
13
14
1.81
25364--25403
3
13.0
3
94
5
71
35
0
0
65
0.93
27568--27602
16
2.2
16
94
0
61
5
11
37
45
1.64
29286--29339
24
2.3
25
81
9
60
14
9
11
64
1.48
42697--42728
1
32.0
1
100
0
64
100
0
0
0
0.00
54386--54441
16
3.5
16
75
0
67
5
10
33
50
1.60

Tables:   1

The End!