Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006479.1 Corchorus capsularis cultivar CVL-1 contig06500, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39719

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3027--3120
45
2.1
43
86
7
127
39
19
13
27
1.89
3578--3622
6
7.2
6
90
9
72
51
15
0
33
1.44
3580--3617
20
1.9
20
100
0
76
50
15
0
34
1.45
3578--3630
12
4.2
12
81
9
52
50
15
0
33
1.44
5515--5570
23
2.4
24
82
11
64
23
3
17
55
1.58
8258--8301
1
44.0
1
100
0
88
0
0
0
100
0.00
9441--9912
68
7.0
66
87
5
651
33
13
20
32
1.92
9442--9912
135
3.5
133
89
5
689
33
14
20
32
1.92
9441--9912
203
2.3
203
91
1
734
33
13
20
32
1.92
12786--12836
15
3.3
15
76
15
50
35
15
37
11
1.84
14620--14650
5
6.2
5
100
0
62
80
0
19
0
0.71
18878--18937
22
2.7
23
87
5
72
51
3
21
23
1.62
18933--19238
55
5.6
55
94
0
488
50
7
16
25
1.71
19071--19156
26
3.2
26
67
20
77
52
6
17
23
1.69
19471--19830
22
16.6
21
77
11
232
55
3
21
20
1.59
19470--19830
43
8.3
41
77
10
269
55
3
21
20
1.59
19423--19538
50
2.3
50
82
5
128
54
5
18
22
1.63
19634--19822
7
26.7
7
68
8
69
56
2
20
21
1.53
19735--19832
14
7.1
14
79
6
92
58
2
21
18
1.49
19738--19808
27
2.6
27
89
8
108
59
2
21
16
1.50
19769--19832
21
3.0
21
88
0
92
56
1
23
18
1.50
19737--19843
14
7.7
14
77
14
78
59
1
19
18
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19701--19907
21
9.5
21
70
11
60
56
1
22
19
1.52
19962--19993
14
2.3
14
94
0
55
53
6
15
25
1.65
26356--26401
23
2.0
24
83
12
60
23
6
17
52
1.68
38702--38726
10
2.5
10
100
0
50
48
20
8
24
1.76

Tables:   1

The End!