Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006481.1 Corchorus capsularis cultivar CVL-1 contig06502, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9002
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:5976 original size:29 final size:30

Alignment explanation


    Indices: 5922--5981  Score: 86
    Period size: 29  Copynumber: 2.0  Consensus size: 30

       5912 CTAAAATGTC

                *               *         
       5922 CTCATATTACAAGTTTATGGGGCAAAAAGT
          1 CTCAAATTACAAGTTTATGGAGCAAAAAGT

                                 *        
       5952 CTCAAATTA-AAGTTTATGGATCAAAAAGT
          1 CTCAAATTACAAGTTTATGGAGCAAAAAGT

             
       5981 C
          1 C

       5982 AATTTTATAC


Statistics
Matches: 27,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  29   19  0.70
  30    8  0.30

ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30


Consensus pattern (30 bp):   
CTCAAATTACAAGTTTATGGAGCAAAAAGT
Done.