Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006495.1 Corchorus capsularis cultivar CVL-1 contig06516, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29222

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118--201
42
2.0
42
90
0
132
32
21
10
35
1.88
682--792
34
3.1
34
65
26
86
38
5
6
49
1.51
656--803
72
2.1
72
92
2
244
41
6
6
46
1.53
1925--1953
8
3.8
8
90
9
51
89
10
0
0
0.48
1922--1953
15
2.2
14
94
5
55
90
9
0
0
0.45
2053--2110
16
3.6
16
85
0
71
37
39
17
5
1.72
3976--4095
15
7.7
16
81
9
140
40
40
13
6
1.71
3976--4095
31
3.9
31
78
11
138
40
40
13
6
1.71
7043--7102
21
2.9
21
76
0
75
31
21
11
35
1.90
9379--9453
27
2.7
28
85
2
107
20
12
25
42
1.86
12659--12715
21
2.7
21
81
5
53
47
1
8
42
1.45
13945--13985
21
2.0
21
100
0
82
41
14
4
39
1.67
18097--18180
17
5.2
17
69
23
65
44
8
3
44
1.51
18095--18180
29
2.7
31
84
13
106
45
8
3
43
1.50
18736--19308
310
1.9
308
90
2
925
37
20
14
27
1.92
20816--20867
27
1.9
27
88
7
79
38
25
9
26
1.86
25309--25371
27
2.3
27
83
5
74
36
25
11
26
1.90

Tables:   1

The End!