Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006499.1 Corchorus capsularis cultivar CVL-1 contig06520, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23709

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
193--237
13
3.5
13
90
3
74
55
8
13
22
1.65
193--245
25
2.1
25
89
6
81
58
9
11
20
1.60
15840--15914
27
2.8
27
83
0
96
46
25
12
16
1.81
16316--16445
67
1.9
67
90
0
206
29
19
22
29
1.98
16578--16855
69
4.0
69
91
1
441
26
15
29
28
1.96
17376--17473
50
2.0
49
91
2
160
37
13
13
35
1.83
17790--17847
6
9.8
6
81
10
75
0
17
0
82
0.66
17778--17846
22
3.3
20
81
15
70
1
18
0
79
0.80
17775--17845
34
2.1
35
86
2
99
1
21
0
77
0.85
17792--17855
22
2.9
22
84
11
85
1
17
0
81
0.77
17790--17864
28
2.6
29
87
6
100
1
20
0
78
0.82
17776--17869
16
6.1
15
77
18
77
3
20
0
76
0.92
17793--17869
10
7.4
11
77
18
60
2
18
0
79
0.85
18555--18695
45
3.2
45
90
5
232
37
21
7
34
1.81

Tables:   1

The End!