Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000650.1 Corchorus capsularis cultivar CVL-1 contig00650, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 789

Length: 1316
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.32


Found at i:316 original size:14 final size:15

Alignment explanation


    Indices: 290--329  Score: 50
    Period size: 14  Copynumber: 2.8  Consensus size: 15

        280 GTATTACTAT

                            
        290 TACTATATT-TTTTTG
          1 TACT-TATTATTTTTG

                           
        305 TA-TTATTATTTTTG
          1 TACTTATTATTTTTG

                        
        319 TACTT-TTATTT
          1 TACTTATTATTT

        330 AAATCAAGAC


Statistics
Matches: 23,  Mismatches: 0, Indels: 5
        0.82            0.00        0.18

Matches are distributed among these distances:
  13    4  0.17
  14   15  0.65
  15    4  0.17

ACGTcount: A:0.20, C:0.05, G:0.05, T:0.70


Consensus pattern (15 bp):   
TACTTATTATTTTTG
Done.