Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006502.1 Corchorus capsularis cultivar CVL-1 contig06523, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9747

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120--204
42
2.0
42
93
0
143
36
4
17
41
1.71
125--213
42
2.1
42
87
2
126
38
5
16
39
1.73
694--788
9
11.0
9
68
24
53
10
22
34
32
1.88
714--818
16
6.6
16
76
16
110
8
21
37
32
1.84
714--818
32
3.3
31
86
5
131
8
21
37
32
1.84
854--886
16
2.1
15
94
5
57
0
18
54
27
1.44
1514--2413
429
2.1
426
84
7
1145
42
13
14
30
1.83
3935--4204
134
2.0
134
98
0
522
32
11
13
42
1.79
4246--4270
13
1.9
13
100
0
50
56
0
0
44
0.99
4926--4955
15
2.1
14
93
6
51
33
0
0
66
0.92
5418--5442
6
4.2
6
100
0
50
48
0
52
0
1.00
6592--6641
25
2.0
25
84
7
66
44
12
14
30
1.81

Tables:   1

The End!