Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006503.1 Corchorus capsularis cultivar CVL-1 contig06524, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14017
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.33


Found at i:2955 original size:2 final size:2

Alignment explanation


    Indices: 2948--2981  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

       2938 TTTCTTCTTA

                                                              
       2948 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

       2982 TACTTTCTTT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
CT

Done.