Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006507.1 Corchorus capsularis cultivar CVL-1 contig06528, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53946

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1855--1894
15
2.5
17
80
19
50
37
0
10
52
1.35
2056--2083
14
2.0
14
100
0
56
21
35
21
21
1.96
13749--13778
2
15.0
2
100
0
60
50
0
0
50
1.00
23292--23596
101
3.0
101
90
1
452
31
11
26
30
1.91
24682--24718
19
1.9
19
94
0
65
54
0
0
45
1.00
25975--26012
17
2.2
18
85
4
51
26
31
13
28
1.93
26369--26421
17
3.1
17
83
8
54
22
33
13
30
1.92
25967--26780
409
2.0
409
94
0
1412
25
30
16
28
1.96
36262--36320
19
2.9
21
68
14
52
38
16
5
38
1.71
37373--37407
18
2.1
18
89
10
56
37
11
5
45
1.64
44280--44364
25
3.2
25
65
12
71
12
10
29
47
1.76
44304--44393
29
3.2
29
66
12
89
12
6
28
52
1.64
44280--44398
54
2.2
54
100
0
238
11
10
28
49
1.72
48547--48605
19
2.9
21
68
14
52
38
16
5
38
1.71
49656--49690
18
2.1
18
89
10
56
37
11
5
45
1.64
50299--50330
16
2.0
16
93
0
55
53
18
6
21
1.67
51815--51848
11
3.1
11
82
0
50
50
17
0
32
1.47
51800--51836
19
2.0
18
89
5
56
35
21
2
40
1.68

Tables:   1

The End!