Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006508.1 Corchorus capsularis cultivar CVL-1 contig06529, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58537

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8957--8999
17
2.5
17
84
3
50
23
32
13
30
1.93
9245--9289
23
2.0
23
82
8
56
8
28
13
48
1.72
12856--12952
49
2.0
49
87
4
142
44
10
10
35
1.73
13846--13876
2
15.5
2
100
0
62
51
0
0
48
1.00
14247--14531
22
13.1
22
70
11
115
35
15
9
39
1.80
14260--14384
45
2.8
44
81
11
139
37
14
9
38
1.79
14518--14590
19
3.6
20
83
7
85
28
17
9
43
1.81
14672--14799
44
2.9
45
75
11
122
33
13
8
44
1.74
14696--14799
22
4.7
22
77
7
86
33
14
8
43
1.76
14822--14886
25
2.8
23
81
11
71
33
16
9
40
1.81
14671--14894
22
10.2
22
69
16
74
33
15
9
42
1.79
14944--14998
22
2.5
23
85
11
80
40
16
3
40
1.66
15107--15246
22
6.3
22
74
8
95
37
18
10
34
1.84
15412--15448
18
2.0
19
85
15
51
64
2
2
29
1.21
15762--15820
31
1.9
31
89
6
93
47
5
18
28
1.70
16892--16950
27
2.1
28
90
3
93
50
5
15
28
1.65
16999--17032
16
2.1
16
94
0
59
67
5
14
11
1.39
17833--17886
15
3.5
15
80
5
63
18
9
31
40
1.82
17821--17893
16
4.7
15
72
6
56
13
9
36
39
1.78
17818--17893
31
2.4
32
84
2
100
13
10
36
39
1.79
18041--18137
16
6.0
16
78
2
86
7
12
28
51
1.66
18041--18127
33
2.7
33
90
1
131
5
12
28
52
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18867--18915
22
2.2
22
82
7
64
61
4
0
34
1.15
18903--18940
10
3.9
10
83
16
53
78
0
0
21
0.74
18903--18936
8
3.8
9
88
11
52
79
0
0
20
0.73
18903--18941
19
2.1
19
90
9
62
76
0
0
23
0.78
22937--22986
20
2.4
20
83
6
55
42
10
2
46
1.49
27203--27248
24
1.9
24
81
0
56
21
10
15
52
1.73
28612--28642
16
1.9
16
93
0
53
22
12
6
58
1.58
36307--36340
13
2.6
13
95
0
59
17
11
8
61
1.54
36350--36399
27
1.9
27
88
8
77
20
0
10
70
1.16
36706--36760
26
2.1
26
86
6
76
38
7
12
41
1.71
43306--43338
13
2.5
13
95
0
57
21
12
9
57
1.62
43335--43366
6
5.5
6
96
3
57
31
0
12
56
1.37
45820--45860
21
2.0
21
95
0
73
21
14
34
29
1.93
46391--46770
156
2.4
158
78
8
427
35
17
16
30
1.92
48117--48146
8
3.9
8
95
4
53
50
0
50
0
1.00
54063--54160
36
2.7
35
88
3
142
17
18
20
43
1.88
54668--54725
26
2.2
26
81
6
64
36
13
0
50
1.42

Tables:   1

The End!